Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g015680.1.1 | Tomato | plastid | 69.71 | 73.6 |
| PGSC0003DMT400089476 | Potato | plastid | 69.71 | 73.6 |
| KRG94625 | Soybean | extracellular | 69.23 | 72.36 |
| KRH73909 | Soybean | plastid | 72.6 | 71.56 |
| KRH14228 | Soybean | plastid | 72.12 | 71.09 |
| Bra028963.1-P | Field mustard | plastid | 69.23 | 68.57 |
| CDY36761 | Canola | plastid | 69.23 | 68.57 |
| AT5G55710.1 | Thale cress | plastid | 67.31 | 66.99 |
| CDY11985 | Canola | plastid | 69.23 | 66.98 |
| CDY20749 | Canola | plastid | 67.79 | 66.82 |
| CDY06558 | Canola | plastid | 67.79 | 66.82 |
| Bra035587.1-P | Field mustard | plastid | 67.79 | 66.82 |
| Os02t0726600-01 | Rice | extracellular | 37.98 | 58.09 |
| Zm00001d017907_P001 | Maize | plastid | 50.48 | 49.07 |
| TraesCS6B01G317500.1 | Wheat | plastid | 49.04 | 46.36 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 49.04 | 45.95 |
| KXG30840 | Sorghum | plastid | 50.0 | 38.81 |
| VIT_04s0023g00790.t01 | Wine grape | mitochondrion | 36.54 | 34.86 |
Protein Annotations
| EntrezGene:100261678 | wikigene:100261678 | MapMan:35.1 | ProteinID:CCB62011 | ProteinID:CCB62011.1 | UniProt:F6I556 |
| EMBL:FN596747 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100261678 | wikigene:LOC100261678 |
| PFAM:PF16166 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | TIGR:TC55090 | TMHMM:TMhelix | InterPro:Tic20 |
| UniParc:UPI00015CB72B | ArrayExpress:VIT_19s0015g00520 | EnsemblPlantsGene:VIT_19s0015g00520 | EnsemblPlants:VIT_19s0015g00520.t01 | unigene:Vvi.13055 | RefSeq:XP_002267869 |
| RefSeq:XP_002267869.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:8590812..8591606
Molecular Weight (calculated)
23457.0 Da
IEP (calculated)
10.028
GRAVY (calculated)
0.388
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSSLLSPL SSTLQSSPLF PIRHPSLLTL TTKLRCPKAQ ERRRSIAAQS KGSNSADPPD RLISAVCYFY PFFDGIQYGK YVLTQFTPIQ LLIQPLFPAI
101: KVFKSFPFNG FLVFLTLYFV VVRNRNFSRY VRFNTMQAIV LDVLLIFPDL LERSFNPRDG LGLDFVMSLD STVFLFLLVS LIYGSSSCLL GQVPRLPIVA
201: EAADRQVL
101: KVFKSFPFNG FLVFLTLYFV VVRNRNFSRY VRFNTMQAIV LDVLLIFPDL LERSFNPRDG LGLDFVMSLD STVFLFLLVS LIYGSSSCLL GQVPRLPIVA
201: EAADRQVL
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.