Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36761 | Canola | plastid | 94.88 | 97.14 |
| Bra028963.1-P | Field mustard | plastid | 86.98 | 89.05 |
| CDY06558 | Canola | plastid | 81.86 | 83.41 |
| CDY20749 | Canola | plastid | 81.4 | 82.94 |
| AT5G55710.1 | Thale cress | plastid | 76.28 | 78.47 |
| PGSC0003DMT400089476 | Potato | plastid | 63.72 | 69.54 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 66.98 | 69.23 |
| Solyc12g015680.1.1 | Tomato | plastid | 63.26 | 69.04 |
| KRH73909 | Soybean | plastid | 63.26 | 64.45 |
| KRH14228 | Soybean | plastid | 62.79 | 63.98 |
| KRG94625 | Soybean | extracellular | 59.07 | 63.82 |
| Os02t0726600-01 | Rice | extracellular | 37.21 | 58.82 |
| TraesCS6B01G317500.1 | Wheat | plastid | 48.37 | 47.27 |
| Zm00001d017907_P001 | Maize | plastid | 46.98 | 47.2 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 47.91 | 46.4 |
| CDY19809 | Canola | plastid | 35.35 | 38.78 |
| KXG30840 | Sorghum | plastid | 46.98 | 37.69 |
| CDX87092 | Canola | plastid | 34.88 | 36.23 |
Protein Annotations
| EnsemblPlants:CDY11985 | EnsemblPlantsGene:GSBRNA2T00060835001 | GO:A0A078FC65 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tic20 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | PFAM:PF16166 | ProteinID:CDY11985 | ProteinID:CDY11985.1 |
| TMHMM:TMhelix | UniParc:UPI0004EF087C | UniProt:A0A078FC65 | MapMan:35.1 | : | : |
Description
BnaC03g14110DBnaC03g14110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC65]
Coordinates
chrLK032015:+:711500..712257
Molecular Weight (calculated)
24216.6 Da
IEP (calculated)
9.060
GRAVY (calculated)
0.461
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISHLLSPL PSLTFFQTKN LTLTGRFSSS LPLNSNPHFP KPSPARERAA STLVLRSKGD DSVDASDRLI SAVCYFYPFF DGIQYGKFII TQYQPFQILI
101: QPLFPAIKAF KSFPFNGFLI FITLYFVVVR NQNFSRYVRF NTMQAIVLDV LLIFPDLLER SFNPTDGFGL DVVMSLDSTV FLFLLVSLIY GFSACLFGLV
201: PRLPIVADAA DRQVL
101: QPLFPAIKAF KSFPFNGFLI FITLYFVVVR NQNFSRYVRF NTMQAIVLDV LLIFPDLLER SFNPTDGFGL DVVMSLDSTV FLFLLVSLIY GFSACLFGLV
201: PRLPIVADAA DRQVL
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.