Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028963.1-P | Field mustard | plastid | 84.21 | 83.81 |
| CDY06558 | Canola | plastid | 82.3 | 81.52 |
| CDY36761 | Canola | plastid | 78.47 | 78.1 |
| CDY11985 | Canola | plastid | 78.47 | 76.28 |
| Bra035587.1-P | Field mustard | plastid | 76.08 | 75.36 |
| CDY20749 | Canola | plastid | 75.6 | 74.88 |
| Solyc12g015680.1.1 | Tomato | plastid | 65.07 | 69.04 |
| PGSC0003DMT400089476 | Potato | plastid | 65.07 | 69.04 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 66.99 | 67.31 |
| KRH14228 | Soybean | plastid | 64.11 | 63.51 |
| KRG94625 | Soybean | extracellular | 60.29 | 63.32 |
| KRH73909 | Soybean | plastid | 63.64 | 63.03 |
| Os02t0726600-01 | Rice | extracellular | 37.8 | 58.09 |
| TraesCS6B01G317500.1 | Wheat | plastid | 49.76 | 47.27 |
| Zm00001d017907_P001 | Maize | plastid | 48.33 | 47.2 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 48.8 | 45.95 |
| KXG30840 | Sorghum | plastid | 46.89 | 36.57 |
| AT2G47840.1 | Thale cress | plastid | 36.36 | 36.54 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835665 | UniProt:A0A178URN8 | ProteinID:AED96671.1 | ArrayExpress:AT5G55710 | EnsemblPlantsGene:AT5G55710 |
| RefSeq:AT5G55710 | TAIR:AT5G55710 | RefSeq:AT5G55710-TAIR-G | EnsemblPlants:AT5G55710.1 | TAIR:AT5G55710.1 | EMBL:AY087311 |
| ProteinID:BAB09238.1 | EMBL:BT001996 | EMBL:BT006255 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009528 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009706 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_200382.1 | ProteinID:OAO95361.1 | PFAM:PF16166 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33510 |
| PANTHER:PTHR33510:SF5 | UniProt:Q9FM67 | TMHMM:TMhelix | InterPro:Tic20 | UniParc:UPI00000AC0F7 | SEG:seg |
Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
Coordinates
chr5:-:22554878..22555890
Molecular Weight (calculated)
23653.1 Da
IEP (calculated)
8.663
GRAVY (calculated)
0.522
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.