Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089476 | Potato | plastid | 98.98 | 98.98 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 73.6 | 69.71 |
| KRG94625 | Soybean | extracellular | 68.02 | 67.34 |
| KRH73909 | Soybean | plastid | 70.05 | 65.4 |
| KRH14228 | Soybean | plastid | 70.05 | 65.4 |
| AT5G55710.1 | Thale cress | plastid | 69.04 | 65.07 |
| CDY36761 | Canola | plastid | 69.04 | 64.76 |
| Bra028963.1-P | Field mustard | plastid | 68.02 | 63.81 |
| CDY11985 | Canola | plastid | 69.04 | 63.26 |
| CDY06558 | Canola | plastid | 67.01 | 62.56 |
| Bra035587.1-P | Field mustard | plastid | 67.01 | 62.56 |
| CDY20749 | Canola | plastid | 66.5 | 62.09 |
| Os02t0726600-01 | Rice | extracellular | 42.13 | 61.03 |
| Zm00001d017907_P001 | Maize | plastid | 50.76 | 46.73 |
| TraesCS6B01G317500.1 | Wheat | plastid | 50.76 | 45.45 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 49.75 | 44.14 |
| Solyc11g008980.1.1 | Tomato | plastid | 38.58 | 37.25 |
| KXG30840 | Sorghum | plastid | 49.24 | 36.19 |
Protein Annotations
| EnsemblPlants:Solyc12g015680.1.1 | EnsemblPlantsGene:Solyc12g015680.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Tic20 |
| PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | PFAM:PF16166 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276A974 |
| UniProt:K4DD04 | MapMan:35.1 | : | : | : | : |
Description
Protein TIC 20-v, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G55710) UniProtKB/Swiss-Prot;Acc:Q9FM67]
Coordinates
chr12:+:5664926..5665519
Molecular Weight (calculated)
22278.5 Da
IEP (calculated)
9.821
GRAVY (calculated)
0.393
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITNLLSTT ITLKHSPFLL LKPSTKLRNP KRPTIRAQSK NDDSVDGPDR LISAITYFYP FFDGVQYGKY VITQFAPIQT LIQPLVPAIR VFKSFPLNGL
101: LVFFTLYFIV VRNPNFSRYV RFNTMQAIVL DVLLIFPDLL ERSFNPSDGF GLDLMMSFDS TVFLFLLVSL VYGTSSCLLG QLPRLPIVAE AADRQVL
101: LVFFTLYFIV VRNPNFSRYV RFNTMQAIVL DVLLIFPDLL ERSFNPSDGF GLDLMMSFDS TVFLFLLVSL VYGTSSCLLG QLPRLPIVAE AADRQVL
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.