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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
plastid: 22065420
plastid: 23198870
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0726600-01 Rice extracellular 57.01 89.71
TraesCS6B01G317500.1 Wheat plastid 75.7 73.64
HORVU6Hr1G072310.1 Barley cytosol, mitochondrion, plasma membrane, plastid 75.7 72.97
KXG30840 Sorghum plastid 85.05 67.91
Solyc12g015680.1.1 Tomato plastid 46.73 50.76
PGSC0003DMT400089476 Potato plastid 46.73 50.76
VIT_19s0015g00520.t01 Wine grape plastid 49.07 50.48
KRG94625 Soybean extracellular 46.73 50.25
Bra028963.1-P Field mustard plastid 47.66 48.57
AT5G55710.1 Thale cress plastid 47.2 48.33
CDY36761 Canola plastid 47.2 48.1
KRH14228 Soybean plastid 47.2 47.87
KRH73909 Soybean plastid 47.2 47.87
CDY06558 Canola plastid 46.73 47.39
CDY11985 Canola plastid 47.2 46.98
CDY20749 Canola plastid 46.26 46.92
Bra035587.1-P Field mustard plastid 45.79 46.45
Protein Annotations
EntrezGene:100193921MapMan:35.1ProteinID:AQK74495.1UniProt:B4FS96EMBL:BT039984EMBL:EU974730
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0009507GO:GO:0009535
GO:GO:0009536GO:GO:0009579GO:GO:0016020GO:GO:0016021PFAM:PF16166PANTHER:PTHR33510
PANTHER:PTHR33510:SF5TMHMM:TMhelixInterPro:Tic20UniParc:UPI00017B8075EnsemblPlantsGene:Zm00001d017907EnsemblPlants:Zm00001d017907_P001
EnsemblPlants:Zm00001d017907_T001SEG:seg::::
Description
Protein TIC 20-v chloroplastic
Coordinates
chr5:+:209973548..209974192
Molecular Weight (calculated)
23325.8 Da
IEP (calculated)
11.217
GRAVY (calculated)
0.455
Length
214 amino acids
Sequence
(BLAST)
001: MASAVSLLLS PPRLLHRDGT SRLLSIPHRR VLLAAPNNAT PRRLLAPAPR ASNKNDNSGA VEAPDRLVAA VAYLYPFLDG AHHGRFLLTQ FPFFGALLRP
101: LAPAARLFHS SPLTPFLLFL TLYFAVVRNQ QAFSRFVRFN AMQAVVLDVL LIFPDLLAQS FAPSGGVGFE IFQSMESTVF LFLLVSLVYG GGACLLGKTP
201: RLPIVADAAE RQVM
Best Arabidopsis Sequence Match ( AT5G55710.1 )
(BLAST)
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.