Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 88.18 | 87.39 |
| Os02t0726600-01 | Rice | extracellular | 52.27 | 84.56 |
| Zm00001d017907_P001 | Maize | plastid | 73.64 | 75.7 |
| KXG30840 | Sorghum | plastid | 71.36 | 58.58 |
| Solyc12g015680.1.1 | Tomato | plastid | 45.45 | 50.76 |
| PGSC0003DMT400089476 | Potato | plastid | 45.0 | 50.25 |
| CDY36761 | Canola | plastid | 47.73 | 50.0 |
| AT5G55710.1 | Thale cress | plastid | 47.27 | 49.76 |
| Bra028963.1-P | Field mustard | plastid | 47.27 | 49.52 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 46.36 | 49.04 |
| CDY11985 | Canola | plastid | 47.27 | 48.37 |
| CDY06558 | Canola | plastid | 45.91 | 47.87 |
| Bra035587.1-P | Field mustard | plastid | 45.91 | 47.87 |
| KRH14228 | Soybean | plastid | 45.45 | 47.39 |
| KRH73909 | Soybean | plastid | 45.45 | 47.39 |
| CDY20749 | Canola | plastid | 45.45 | 47.39 |
| KRG94625 | Soybean | extracellular | 42.73 | 47.24 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G317500.1 | EnsemblPlantsGene:TraesCS6B01G317500 | InterPro:Tic20 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | PFAM:PF16166 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:565418040..565418878
Molecular Weight (calculated)
23294.7 Da
IEP (calculated)
10.259
GRAVY (calculated)
0.563
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVSLLLS SPRPLHRAAP SLLSPPAARA RLPLLGPSSA AALLPRRPHG LLAPPPRANN DNSDAVGAPD RLVAAVAYLY PFLDGAHHGR FLVAQYPVFN
101: AVLSPLGPAA RLFHSSPLTP FLLFITLYFA VVRNQQAFSR FVRFNAMQAV ALDVLLIVPD LLAQSFAPSG GGIGLDIFTS LENTVFLFLL VSLVYGGGAC
201: LLGITPRLPI VADAAERQVM
101: AVLSPLGPAA RLFHSSPLTP FLLFITLYFA VVRNQQAFSR FVRFNAMQAV ALDVLLIVPD LLAQSFAPSG GGIGLDIFTS LENTVFLFLL VSLVYGGGAC
201: LLGITPRLPI VADAAERQVM
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.