CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0726600-01	Rice	extracellular	44.4	87.5
Zm00001d017907_P001	Maize	plastid	67.91	85.05
TraesCS6B01G317500.1	Wheat	plastid	58.58	71.36
HORVU6Hr1G072310.1	Barley	cytosol, mitochondrion, plasma membrane, plastid	57.46	69.37
VIT_19s0015g00520.t01	Wine grape	plastid	38.81	50.0
Solyc12g015680.1.1	Tomato	plastid	36.19	49.24
PGSC0003DMT400089476	Potato	plastid	35.82	48.73
CDY36761	Canola	plastid	37.69	48.1
Bra028963.1-P	Field mustard	plastid	37.31	47.62
KRG94625	Soybean	extracellular	35.07	47.24
CDY11985	Canola	plastid	37.69	46.98
AT5G55710.1	Thale cress	plastid	36.57	46.89
CDY06558	Canola	plastid	36.57	46.45
KRH14228	Soybean	plastid	35.82	45.5
KRH73909	Soybean	plastid	35.82	45.5
CDY20749	Canola	plastid	35.82	45.5
Bra035587.1-P	Field mustard	plastid	35.45	45.02

Protein Annotations

EnsemblPlants:KXG30840	EnsemblPlantsGene:SORBI_3004G253400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021
InterPro:Tic20	PANTHER:PTHR33510	PANTHER:PTHR33510:SF5	PFAM:PF16166	ProteinID:KXG30840	ProteinID:KXG30840.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0007F218FC	UniProt:A0A194YSN3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:-:59913891..59915008

Molecular Weight (calculated)

29279.0 Da

IEP (calculated)

10.077

GRAVY (calculated)

0.411

Length

268 amino acids

Sequence
(BLAST)

001: MASAVSLLLL SPPRHLHRDV TSRLLSTPHR RVLLAAPTSA TPRRLLAAPP PRASNNNDNS GAVEAPDRLV AAVAYLYPFL DGAHHGRFLL AQFPFFNALL
101: RPLGPAARLF HSSPLTPFLL FLTLYFAVVR NQQAFSRFVR FNAMQAVVLD VLLIFPDLLA QSFAPSGGVG FEVFQSMEST VFLFLLVSLV YGSGACLLGK
201: TPRLPIVADA AERQKHRNGS LVLAANHKLS IVYNCLAVYI GLVTTSMDEL CKVDTMTLQP SVLPYLLN

Best Arabidopsis Sequence Match ( AT5G55710.1 )
(BLAST)

001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL

Arabidopsis Description

TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.