Factsheet for VIT_04s0023g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47840.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036539.1-P	Field mustard	plastid	51.83	57.65
CDY19809	Canola	plastid	51.83	57.65
CDX87092	Canola	plastid	54.59	57.49
PGSC0003DMT400041830	Potato	mitochondrion, plastid	53.21	57.43
Solyc11g008980.1.1	Tomato	plastid	53.67	57.35
AT2G47840.1	Thale cress	plastid	54.13	56.73
GSMUA_Achr6P28740_001	Banana	mitochondrion	51.83	54.33
KRH00947	Soybean	plastid	49.08	53.23
VIT_19s0015g00520.t01	Wine grape	plastid	34.86	36.54

Protein Annotations

EntrezGene:100249658	wikigene:100249658	MapMan:35.1	UniProt:A5C9T8	EMBL:AM487298	ProteinID:CAN71033
ProteinID:CAN71033.1	ProteinID:CCB44501	ProteinID:CCB44501.1	EMBL:FN594959	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706
GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100249658	wikigene:LOC100249658	PFAM:PF16166
PANTHER:PTHR33510	PANTHER:PTHR33510:SF1	TIGR:TC57855	TMHMM:TMhelix	InterPro:Tic20	UniParc:UPI00015229BA
ArrayExpress:VIT_04s0023g00790	EnsemblPlantsGene:VIT_04s0023g00790	EnsemblPlants:VIT_04s0023g00790.t01	unigene:Vvi.15861	RefSeq:XP_002276795	RefSeq:XP_002276795.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:17200930..17201836

Molecular Weight (calculated)

24268.4 Da

IEP (calculated)

11.086

GRAVY (calculated)

0.556

Length

218 amino acids

Sequence
(BLAST)

001: MASIPLLRLS LHRQTPLKPL HQPYSAASIT AQLPNFPHPL KPTLQISPRP LRPRSRPSIT MSYSAVPATE RLISAAAYCL PFFNGLQYGR FLLMQYPALG
101: LVLEPILPIL SLYRSIPYAS FVAFFALYLG VVRNPSFSRF VRFNSMQAVV LDVLLVVPLL VNRIFNPGRA GVGFRLMVMG HNAIFVFVVA CFLYSLGFCI
201: LGRTPYLPFV ADAAGRQL

Best Arabidopsis Sequence Match ( AT2G47840.1 )
(BLAST)

001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL

Arabidopsis Description

TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.