Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- plasma membrane 2
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47840.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g008980.1.1 | Tomato | plastid | 95.05 | 94.12 |
| Bra036539.1-P | Field mustard | plastid | 52.48 | 54.08 |
| CDY19809 | Canola | plastid | 52.48 | 54.08 |
| VIT_04s0023g00790.t01 | Wine grape | mitochondrion | 57.43 | 53.21 |
| AT2G47840.1 | Thale cress | plastid | 54.46 | 52.88 |
| KRH00947 | Soybean | plastid | 50.49 | 50.75 |
| CDX87092 | Canola | plastid | 50.49 | 49.28 |
| GSMUA_Achr6P28740_001 | Banana | mitochondrion | 49.51 | 48.08 |
| PGSC0003DMT400089476 | Potato | plastid | 38.12 | 39.09 |
Protein Annotations
| EntrezGene:102595340 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 | GO:GO:0016020 |
| GO:GO:0016021 | UniProt:M1BC29 | PFAM:PF16166 | EnsemblPlantsGene:PGSC0003DMG400016230 | PGSC:PGSC0003DMG400016230 | EnsemblPlants:PGSC0003DMT400041830 |
| PANTHER:PTHR33510 | PANTHER:PTHR33510:SF1 | TMHMM:TMhelix | InterPro:Tic20 | UniParc:UPI000295870A | RefSeq:XP_006353229.1 |
| SEG:seg | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016230]
Coordinates
chr11:-:2854523..2855335
Molecular Weight (calculated)
22788.4 Da
IEP (calculated)
10.848
GRAVY (calculated)
0.471
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPLLRFT PTTPRLLPHP LNLNFLQTRI QTRTRIHTKP TSISASYNPI PATDRLISAV AYFLPFFNGL QYGRFLFAQF PALALPFQPI LPLLSLYRSL
101: PYASFVTFFA LYLGIARNEN LNKYPRFNAL QAVVLDVLLV LPMLIQRIFS PGQSGIGLKF TVWMHNGLFV FVVGCFVYGL VSSILGKTPY LPFVTEAANR
201: QM
101: PYASFVTFFA LYLGIARNEN LNKYPRFNAL QAVVLDVLLV LPMLIQRIFS PGQSGIGLKF TVWMHNGLFV FVVGCFVYGL VSSILGKTPY LPFVTEAANR
201: QM
001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
Arabidopsis Description
TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.