Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
- extracellular 2
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47840.1 | KRH11076 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH21197 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH42923 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH42926 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH45251 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH59035 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | KRH59036 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G47840.1 | Thale cress | plastid | 54.73 | 52.88 |
| Bra036539.1-P | Field mustard | plastid | 51.24 | 52.55 |
| CDY19809 | Canola | plastid | 51.24 | 52.55 |
| PGSC0003DMT400041830 | Potato | mitochondrion, plastid | 50.75 | 50.49 |
| CDX87092 | Canola | plastid | 51.24 | 49.76 |
| Solyc11g008980.1.1 | Tomato | plastid | 50.25 | 49.51 |
| VIT_04s0023g00790.t01 | Wine grape | mitochondrion | 53.23 | 49.08 |
| GSMUA_Achr6P28740_001 | Banana | mitochondrion | 48.26 | 46.63 |
| KRG94625 | Soybean | extracellular | 36.32 | 36.68 |
| KRH14228 | Soybean | plastid | 37.81 | 36.02 |
| KRH73909 | Soybean | plastid | 36.82 | 35.07 |
Protein Annotations
| EntrezGene:100794929 | MapMan:35.1 | EMBL:ACUP02011483 | ncoils:Coil | EnsemblPlantsGene:GLYMA_18G243800 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009706 | GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | UniProt:I1N405 | EnsemblPlants:KRH00947 |
| ProteinID:KRH00947 | ProteinID:KRH00947.1 | PFAM:PF16166 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF1 | TMHMM:TMhelix |
| InterPro:Tic20 | UniParc:UPI0001BA8A10 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:53176043..53177130
Molecular Weight (calculated)
22281.7 Da
IEP (calculated)
10.643
GRAVY (calculated)
0.496
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLPLLRPC CFLPTPTLKP SLTRPTPFLP LKSKKNPQNG AVGTRMSNTA TPPPTERLIS IASYALPFFN SLQYGRYLLA QNPTLAVLFD PIVPLLAFYR
101: SIPYSSFVAF FALYLGIVRN PSFPRYVRFN AMQAVTLDVL LVLPLLFHRI FSPARGGPIL VWSSNAIFIF SLICFVYSVA SCVLGRTPHL PFVADAASRQ
201: I
101: SIPYSSFVAF FALYLGIVRN PSFPRYVRFN AMQAVTLDVL LVLPLLFHRI FSPARGGPIL VWSSNAIFIF SLICFVYSVA SCVLGRTPHL PFVADAASRQ
201: I
001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
Arabidopsis Description
TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.