Factsheet for GSMUA_Achr6P28740_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47840.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g00790.t01	Wine grape	mitochondrion	54.33	51.83
PGSC0003DMT400041830	Potato	mitochondrion, plastid	48.08	49.51
Bra036539.1-P	Field mustard	plastid	46.15	48.98
CDY19809	Canola	plastid	46.15	48.98
CDX87092	Canola	plastid	48.56	48.79
Solyc11g008980.1.1	Tomato	plastid	47.6	48.53
KRH00947	Soybean	plastid	46.63	48.26
AT2G47840.1	Thale cress	plastid	47.6	47.6

Protein Annotations

EnsemblPlants:GSMUA_Achr6P28740_001	EnsemblPlants:GSMUA_Achr6T28740_001	EnsemblPlantsGene:GSMUA_Achr6G28740_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941
GO:GO:0016020	GO:GO:0016021	InterPro:Tic20	PANTHER:PTHR33510	PANTHER:PTHR33510:SF1	PFAM:PF16166
SEG:seg	TMHMM:TMhelix	UniParc:UPI00029645DD	UniProt:M0TB19	MapMan:35.1	:

Description

Putative Ycf60-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G28740_001]

Coordinates

chr6:+:29045893..29046519

Molecular Weight (calculated)

22666.3 Da

IEP (calculated)

11.912

GRAVY (calculated)

0.696

Length

208 amino acids

Sequence
(BLAST)

001: MATLALLRFP PPTRFDRFRA SPPPAIHLRL RSMPAVAIPS LPARRSVTVS MARTAVPATD RLISALAYFL PFLDSLHYGR FLFARVPAAA AAVAPIIPLA
101: AAYRSVPYAA FVAFFALYLG VVRNPNLSHF VRFNAMQAVV LDVLLALPAL LQRVFGTPSR GVGFRVMEMG YHAIFAFSVA CFLYALLSCV LGRTPHLPLV
201: ATAADRQL

Best Arabidopsis Sequence Match ( AT2G47840.1 )
(BLAST)

001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL

Arabidopsis Description

TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.