Factsheet for Bra040182.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78801	Canola	plasma membrane	99.61	99.61
Bra012640.1-P	Field mustard	cytosol	77.43	94.76
CDY54781	Canola	plasma membrane	92.61	92.61
AT4G17790.1	Thale cress	plasma membrane	85.99	83.71
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	33.07	78.7
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	54.09	78.09
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	77.04	77.95
KRH39560	Soybean	plasma membrane	77.04	76.74
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	71.6	74.19
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	68.09	71.72
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	70.82	71.65
Os02t0693500-01	Rice	plasma membrane	70.43	70.98
Solyc08g076670.2.1	Tomato	plasma membrane	75.88	70.65
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	66.93	70.49
PGSC0003DMT400045191	Potato	plasma membrane	75.49	70.29
KRH74398	Soybean	golgi, peroxisome, plasma membrane	77.82	69.44
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.09	68.9
Os04t0592600-01	Rice	plasma membrane, vacuole	68.09	68.9
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.09	68.9
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	67.7	68.5
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.7	68.5
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	66.93	67.72
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	65.76	66.54
EES05689	Sorghum	plasma membrane	64.59	65.35
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	63.81	64.57
Bra016097.1-P	Field mustard	plasma membrane	61.48	58.09
Bra003904.1-P	Field mustard	peroxisome	60.7	56.32
HORVU2Hr1G049420.14	Barley	cytosol, plastid	66.93	56.21
Bra038380.1-P	Field mustard	plasma membrane	58.37	54.55
Zm00001d026194_P003	Maize	plasma membrane	44.36	44.19
Bra007997.1-P	Field mustard	plasma membrane	33.85	42.23
HORVU7Hr1G044670.7	Barley	plasma membrane	23.35	39.47

Protein Annotations

EnsemblPlants:Bra040182.1	EnsemblPlants:Bra040182.1-P	EnsemblPlantsGene:Bra040182	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6	PFAM:PF09335	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002545CCF	UniProt:M4FGF4	MapMan:35.1	:	:	:

Description

AT4G17790 (E=4e-118) | INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71940.1); Has 2258 Blast hits to 2258 proteins in 517 species: Archae - 4; Bacteria - 1129; Metazoa - 188; Fungi - 22; Plants - 104; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).

Coordinates

chrA01:+:4533857..4534876

Molecular Weight (calculated)

28347.3 Da

IEP (calculated)

8.284

GRAVY (calculated)

0.677

Length

257 amino acids

Sequence
(BLAST)

001: MEREGETTIG EVAPATPRRC SLSFWEVTTA SGVVLGFLVG LLCVYLTMPQ SDYSFLKLPR NLQDLQILRD NLEIYTSDYT VQVLVGYCLV YVFMQTFMIP
101: GTVFMSLLAG ALFGVIKGMA LVVSTATAGA SSCFFLSKLI GRPLIFSLWP DKLIFFQDQV ARRKDGLLNY MLFLRLTPTL PNTFINVASP IVDVPYHIFF
201: LATFIGLIPA AYVTVRAGIA LGELKSLGDL YDFSSMATLF LIGVLSVTPT LISKKKV

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.