Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G447800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 99.61 | 99.61 |
| TraesCS2B01G468200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 98.82 | 98.82 |
| HORVU7Hr1G023440.1 | Barley | endoplasmic reticulum, plasma membrane | 68.9 | 98.31 |
| HORVU2Hr1G054810.1 | Barley | endoplasmic reticulum, extracellular | 41.34 | 97.22 |
| HORVU7Hr1G051100.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 94.49 | 94.49 |
| Zm00001d000439_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 90.94 | 90.94 |
| Os04t0592600-01 | Rice | plasma membrane, vacuole | 90.94 | 90.94 |
| EES12761 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 90.16 | 90.16 |
| HORVU2Hr1G049420.14 | Barley | cytosol, plastid | 93.31 | 77.45 |
| Bra012640.1-P | Field mustard | cytosol | 63.78 | 77.14 |
| CDX90446 | Canola | cytosol | 63.78 | 77.14 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 73.23 | 75.0 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 71.65 | 71.65 |
| VIT_02s0012g01630.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 71.65 | 71.65 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 67.32 | 70.08 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 67.32 | 70.08 |
| KRH39560 | Soybean | plasma membrane | 69.69 | 68.6 |
| Bra040182.1-P | Field mustard | plasma membrane | 68.9 | 68.09 |
| CDY54781 | Canola | plasma membrane | 68.5 | 67.7 |
| CDX78801 | Canola | plasma membrane | 68.5 | 67.7 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 69.69 | 64.13 |
| Solyc08g076670.2.1 | Tomato | plasma membrane | 69.69 | 64.13 |
| AT4G17790.1 | Thale cress | plasma membrane | 66.54 | 64.02 |
| KRH74398 | Soybean | golgi, peroxisome, plasma membrane | 69.69 | 61.46 |
| CDY01492 | Canola | plasma membrane | 33.86 | 52.12 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 54.72 | 49.29 |
| CDY01491 | Canola | golgi, peroxisome, plasma membrane | 42.91 | 46.19 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G446700.1 | EnsemblPlantsGene:TraesCS2D01G446700 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF6 | PFAM:PF09335 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:556938707..556941435
Molecular Weight (calculated)
27494.9 Da
IEP (calculated)
6.253
GRAVY (calculated)
0.675
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGREDRFPVW EAALGAGVAA VFAAGLVGVY LSMPDSDYSF LKLPRNLHEL QILTGHLENY TSDYTVQVLI GYCAVYIFMQ TFMIPGTIFM SLLAGALFGQ
101: LRGVALVVFA ASAGASSCFF LSKLIGKPLV FVLWPDKLTF FQKQVAKRRE KLLNYMLFLR VTPTLPNTFI NLASPIVDVP FHTFLLATLI GLIPAAYVTV
201: RAGIALGELT SLSDLYDTQS VALLFLIGVV SVTPALLSKD EAQDTAPEIA AGAS
101: LRGVALVVFA ASAGASSCFF LSKLIGKPLV FVLWPDKLTF FQKQVAKRRE KLLNYMLFLR VTPTLPNTFI NLASPIVDVP FHTFLLATLI GLIPAAYVTV
201: RAGIALGELT SLSDLYDTQS VALLFLIGVV SVTPALLSKD EAQDTAPEIA AGAS
001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.