CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	33.33	50.93
Bra012640.1-P	Field mustard	cytosol	64.24	50.48
CDX90446	Canola	cytosol	64.24	50.48
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	46.06	42.7
CDY54781	Canola	plasma membrane	64.24	41.25
CDX78801	Canola	plasma membrane	63.64	40.86
AT4G17790.1	Thale cress	plasma membrane	62.42	39.02
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	55.76	36.22
KRH39560	Soybean	plasma membrane	56.36	36.05
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	53.33	35.48
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	53.33	34.65
Os02t0693500-01	Rice	plasma membrane	53.33	34.51
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	50.91	34.43
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	52.73	34.25
Os04t0592600-01	Rice	plasma membrane, vacuole	52.12	33.86
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.12	33.86
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.12	33.86
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.12	33.86
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.52	33.46
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	50.3	32.68
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	47.88	32.38
KRH74398	Soybean	golgi, peroxisome, plasma membrane	55.76	31.94
EES05689	Sorghum	plasma membrane	49.09	31.89
PGSC0003DMT400045191	Potato	plasma membrane	52.73	31.52
Solyc08g076670.2.1	Tomato	plasma membrane	52.73	31.52
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	48.48	31.5
CDX96363	Canola	plasma membrane	46.06	27.94
CDX72847	Canola	plasma membrane	46.06	27.94
CDY03670	Canola	peroxisome	34.55	27.67
CDX82201	Canola	peroxisome	46.06	27.54
HORVU2Hr1G049420.14	Barley	cytosol, plastid	50.3	27.12
CDY48052	Canola	plasma membrane	42.42	25.45
CDX75108	Canola	plasma membrane	42.42	25.45
CDY36672	Canola	cytosol, nucleus, plasma membrane	45.45	16.56
CDX68293	Canola	cytosol, nucleus, plasma membrane, plastid	45.45	16.27
HORVU7Hr1G044670.7	Barley	plasma membrane	10.3	11.18
CDY01491	Canola	golgi, peroxisome, plasma membrane	15.15	10.59
Zm00001d026194_P003	Maize	plasma membrane	15.15	9.69

Protein Annotations

EnsemblPlants:CDY01492	EnsemblPlantsGene:GSBRNA2T00112502001	GO:A0A078EK08	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6
PFAM:PF09335	ProteinID:CDY01492	ProteinID:CDY01492.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF26A4
MapMan:35.1	:	:	:	:	:

Description

BnaC07g34820D

Coordinates

chrLK031927:+:126740..127952

Molecular Weight (calculated)

18214.9 Da

IEP (calculated)

11.034

GRAVY (calculated)

0.560

Length

165 amino acids

Sequence
(BLAST)

001: MESIQNLNSL GLGQLLIHNN GKITSIRKRK EFLFLQALWP PLSLLKSALS LLFLGLRPSL HLLGIRPVAR RKDGLLNYML FLRLTPTLPN TFINVASPIV
101: DVPYHIFFLA TFIGLIPAAF VTVRAGIALG EQQSLGDLYD FSSMATLFLI GVLSVTPTLI SKKKA

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.