Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- cytosol 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90446 | Canola | cytosol | 100.0 | 100.0 |
| Bra040182.1-P | Field mustard | plasma membrane | 94.76 | 77.43 |
| HORVU2Hr1G054810.1 | Barley | endoplasmic reticulum, extracellular | 39.52 | 76.85 |
| HORVU7Hr1G023440.1 | Barley | endoplasmic reticulum, plasma membrane | 64.76 | 76.4 |
| AT4G17790.1 | Thale cress | plasma membrane | 92.86 | 73.86 |
| VIT_02s0012g01630.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 83.33 | 68.9 |
| KRH39560 | Soybean | plasma membrane | 83.33 | 67.83 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 79.05 | 66.94 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 76.67 | 65.98 |
| Os02t0693500-01 | Rice | plasma membrane | 79.05 | 65.1 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 78.1 | 64.57 |
| CDY01492 | Canola | plasma membrane | 50.48 | 64.24 |
| TraesCS2D01G446700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 77.14 | 63.78 |
| TraesCS2B01G468200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 77.14 | 63.78 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 73.81 | 63.52 |
| Os04t0592600-01 | Rice | plasma membrane, vacuole | 76.67 | 63.39 |
| TraesCS2A01G447800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 76.67 | 63.39 |
| Zm00001d000439_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 76.19 | 62.99 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 81.9 | 62.32 |
| Solyc08g076670.2.1 | Tomato | plasma membrane | 81.9 | 62.32 |
| EES12761 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 75.24 | 62.2 |
| EES05689 | Sorghum | plasma membrane | 73.81 | 61.02 |
| HORVU7Hr1G051100.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 73.81 | 61.02 |
| KRH74398 | Soybean | golgi, peroxisome, plasma membrane | 82.86 | 60.42 |
| Zm00001d017689_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 72.38 | 59.84 |
| HORVU2Hr1G049420.14 | Barley | cytosol, plastid | 74.29 | 50.98 |
| Bra016097.1-P | Field mustard | plasma membrane | 65.71 | 50.74 |
| Bra003904.1-P | Field mustard | peroxisome | 64.29 | 48.74 |
| Bra038380.1-P | Field mustard | plasma membrane | 62.86 | 48.0 |
| Zm00001d026194_P003 | Maize | plasma membrane | 46.67 | 37.98 |
| Bra007997.1-P | Field mustard | plasma membrane | 31.9 | 32.52 |
| HORVU7Hr1G044670.7 | Barley | plasma membrane | 22.38 | 30.92 |
Protein Annotations
| EnsemblPlants:Bra012640.1 | EnsemblPlants:Bra012640.1-P | EnsemblPlantsGene:Bra012640 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF6 | PFAM:PF09335 | TMHMM:TMhelix | UniParc:UPI00025409B2 |
| UniProt:M4D830 | MapMan:35.1 | : | : | : | : |
Description
AT4G17790 (E=3e-108) | INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71940.1); Has 2258 Blast hits to 2258 proteins in 517 species: Archae - 4; Bacteria - 1129; Metazoa - 188; Fungi - 22; Plants - 104; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).
Coordinates
chrA03:+:22989551..22990971
Molecular Weight (calculated)
23287.0 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.707
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQSDYSFLK IPRNLHDLQI LRDNLEVYTS DYTVQVLVGY SLVYVFMQTF MIPGTVFMSL LAGALFGVFK GMVLVVSTAT AGASSCFFLS KLIGRPLIFS
101: LWPDKLVFFQ DQVARRKDGL LNYMLFLRLT PTLPNTFINV ASPIVDVPYH IFFLATFIGL IPAAFVTVRA GIALGELQSL GDLYDFSSMA TLFLIGVLSV
201: TPTLISKKKA
101: LWPDKLVFFQ DQVARRKDGL LNYMLFLRLT PTLPNTFINV ASPIVDVPYH IFFLATFIGL IPAAFVTVRA GIALGELQSL GDLYDFSSMA TLFLIGVLSV
201: TPTLISKKKA
001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.