Factsheet for TraesCS1D01G421100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, golgi, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G413700.1	Wheat	golgi	98.2	98.36
TraesCS1B01G443700.1	Wheat	golgi	98.03	98.03
HORVU1Hr1G090770.2	Barley	endoplasmic reticulum, golgi, plasma membrane	97.54	97.7
Os12t0169000-00	Rice	plasma membrane	83.77	86.17
Zm00001d023543_P003	Maize	cytosol, endoplasmic reticulum, peroxisome	82.95	80.32
TraesCS4D01G108100.1	Wheat	cytosol	76.56	77.19
KXG23065	Sorghum	plastid	84.1	68.95
VIT_07s0031g02700.t01	Wine grape	golgi	64.26	64.26
KRH40976	Soybean	golgi	62.79	62.89
KRH59629	Soybean	golgi	62.13	62.34
GSMUA_Achr2P20550_001	Banana	mitochondrion	71.8	61.09
KRH53966	Soybean	cytosol, golgi, peroxisome	62.13	61.03
KRH63971	Soybean	cytosol, golgi, peroxisome	61.8	60.81
Solyc12g070080.1.1	Tomato	cytosol, plastid	13.93	57.05
Solyc12g070090.1.1	Tomato	cytosol	16.72	47.22
TraesCS2D01G040000.1	Wheat	cytosol	41.31	42.28
TraesCS2D01G039700.2	Wheat	cytoskeleton, cytosol, peroxisome	42.62	42.21
TraesCS2D01G039600.2	Wheat	mitochondrion, nucleus, peroxisome	41.97	40.83
TraesCS2D01G039900.1	Wheat	mitochondrion	37.7	37.89
TraesCS2D01G521500.1	Wheat	plastid	23.93	26.99
TraesCS5D01G083700.1	Wheat	cytosol	11.48	23.26
TraesCS2D01G573300.1	Wheat	cytosol	15.74	21.38
TraesCS2D01G573400.3	Wheat	cytosol, endoplasmic reticulum, peroxisome	14.75	20.79
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	18.52	19.22
TraesCS3D01G341200.1	Wheat	mitochondrion, vacuole	19.18	18.25
TraesCS6D01G298000.1	Wheat	plastid	17.7	17.73
Bra022265.1-P	Field mustard	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G421100.1	EnsemblPlantsGene:TraesCS1D01G421100	Gene3D:3.90.1300.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040
GO:GO:0016787	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	InterPro:IPR036928	KEGG:00970+6.3.5.7
PANTHER:PTHR11895	PANTHER:PTHR11895:SF135	PFAM:PF01425	SEG:seg	SUPFAM:SSF75304	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:477213371..477219305

Molecular Weight (calculated)

65664.2 Da

IEP (calculated)

7.106

GRAVY (calculated)

0.022

Length

610 amino acids

Sequence
(BLAST)

001: MGVFGSSAKV YRPAPEVDLG PGSGELYISP NVKAPRVAGL LVKIFVWVLE MPVVGWVLLY ILKKDNLINK LVSEAEIPEP PLFTSTHRWE DTPEQNVCLT
101: KPGLSPAERV REAVDCLPTR LESPLAADVP PSSSLKRWTI MDFSRAYSSG ETTPVQVAKR FLAAVKECSG PTMNMAFFIS CDPEDVLKQA EESTLRYQTG
201: TPLSVMDGVL VAVKDEIDCL PYPTTGGTRW LGKARPCEAD AACVAQLRAC GAVLAGKTNM HELGAGTSGI NPHHGSARNP YNVGKVAGGS SSGSAAVVCA
301: GLCPVALGVD GGGSVRMPAA LCGVVGFKPT AGRLSNAGVL PLNWTVGMAG ILAGTVEDAV VAYSAIVDQS QPSYLRPELN LPMLTSTPSI SNVRLAKYGK
401: WFNDSSEDIR TCCDKALQTL RAQYGWETLD VTVPEIEEMR LAHYVTIGSE CTASLAKYLD KLKRSEIGWD VRVALGVYGS FSSRAYLNSQ RLRNRQMFFH
501: KEIFKTADVI VSPMTGVTAY TLQDDALSSG ELDYINGAAL IRYSIAGNFL GLPAITVMVG QDKGGLPIGL QFIGRPWSEA TLLHIAFAMQ EACSKNHRKP
601: VVFYDLLKKD

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.