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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93679 Canola mitochondrion 94.5 94.34
Bra018737.1-P Field mustard mitochondrion 94.33 94.18
CDX75952 Canola endoplasmic reticulum 78.17 79.49
CDY51926 Canola endoplasmic reticulum 78.0 79.19
VIT_17s0000g02400.t01 Wine grape endoplasmic reticulum 67.33 68.47
KRH41841 Soybean endoplasmic reticulum 65.83 66.84
Solyc03g118690.2.1 Tomato plastid 65.33 66.44
KRH60539 Soybean extracellular 65.0 66.44
PGSC0003DMT400014757 Potato endoplasmic reticulum 64.83 65.93
CDX95800 Canola endoplasmic reticulum 78.5 61.57
Os03t0707900-01 Rice plasma membrane 58.17 59.56
CDX92180 Canola endoplasmic reticulum 77.67 58.4
EER91017 Sorghum endoplasmic reticulum, golgi 55.5 56.63
GSMUA_Achr1P21290_001 Banana endoplasmic reticulum 55.83 56.59
TraesCS4D01G040700.1 Wheat endoplasmic reticulum 55.17 56.29
TraesCS4A01G270900.1 Wheat endoplasmic reticulum 54.83 55.95
Zm00001d033682_P001 Maize endoplasmic reticulum, golgi, plasma membrane 55.67 55.48
TraesCS4B01G043200.1 Wheat endoplasmic reticulum 52.83 54.1
CDY21581 Canola cytosol 48.33 48.09
CDX69906 Canola cytosol, plastid 47.83 47.6
Zm00001d013463_P001 Maize golgi, plasma membrane, vacuole 34.83 47.29
HORVU4Hr1G006870.1 Barley plastid 50.67 46.63
CDY22653 Canola cytosol 32.0 45.5
CDY06342 Canola cytosol 31.67 45.02
CDY03602 Canola cytosol, plastid 20.5 40.2
CDY46509 Canola cytosol 6.33 20.99
CDY59872 Canola plastid 15.5 17.29
CDY04173 Canola plastid 15.33 17.1
CDY31318 Canola cytosol 15.67 15.33
CDY46805 Canola cytosol 15.17 14.89
CDX84527 Canola cytosol 15.17 14.77
CDY58262 Canola cytosol 14.83 14.45
CDX70030 Canola plastid 13.5 12.52
CDX98979 Canola plastid 13.33 12.33
CDX69905 Canola mitochondrion 0.0 0.0
Protein Annotations
KEGG:00970+6.3.5.7Gene3D:1.25.40.10MapMan:23.1.2.4Gene3D:3.90.1300.10GO:A0A078HSB8UniProt:A0A078HSB8
InterPro:AS_sfInterPro:AmidaseInterPro:Amidase_domEnsemblPlants:CDY40591ProteinID:CDY40591ProteinID:CDY40591.1
GO:GO:0003674GO:GO:0003824GO:GO:0004040GO:GO:0005488GO:GO:0005515GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00071424001InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR036928PFAM:PF01425
PFscan:PS50005PFscan:PS50293PANTHER:PTHR11895PANTHER:PTHR11895:SF39MetaCyc:PWY-5921SMART:SM00028
SUPFAM:SSF48452SUPFAM:SSF75304TMHMM:TMhelixInterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeat
UniParc:UPI0004EEC3CASEG:seg::::
Description
BnaC06g02070DBnaC06g02070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSB8]
Coordinates
chrLK032475:+:19231..22453
Molecular Weight (calculated)
65223.7 Da
IEP (calculated)
8.918
GRAVY (calculated)
-0.133
Length
600 amino acids
Sequence
(BLAST)
001: MQPKRRHIPA SRASKLCVLL GLGLAGVLLV TKKLKKRVRE DFGAFIEKLL LLPPPQPAPP KAPHPLTALS FALSDLFDVK GYVSGFGHPD WIRTHEAAAS
101: TSPVVSVLVE GGATCVGKTV VGEFAFSISG ETKHYDTPTN PAAPAHIPGG ACSGAAVAVS ANLVDFSLGI DTVGGVRAAA GYCGVLGFRS SQGIVSNAGI
201: IPVSSSLDAV GWFARDPNTL RRVGHVILQL PFEAQRNPRQ IILADDYLQF SKVPVDRIKQ VVIKSAEKLF GRQALKHENL EKYLEAKVPS LKEFCREKAN
301: GDDAKLTTSM LLANVMQLLQ RHEFLQNHGD WINTVNPSID PAVYSQLCKT PELTDEVIEN LNAVRNQMRV AIGSLLKDDG ILVIPTMPSV PPKLGSKEIM
401: SEDYQNRASS LLCVASISGC CQVTVPLGKH DKCPVSVSLI ARHGGDRFLL DTVQKMYASL QENSTLMVNP KSSINTISQE ESAEIAKEKG NQAFKEKQWQ
501: KAIGMYSEAI KLNDENGTYY SNRAAAYLEL GSFRQAEADC TKALALDKKN IKAYLRRGTA REMLGNFKEA IDDFSYALVL EPNNKRAALS ADRLGKVFLQ
Best Arabidopsis Sequence Match ( AT1G56440.2 )
(BLAST)
001: MARSPSKHGR DQTQDWELSL KDKDKKIKQQ PANSSNPSSE TFRPSGSGKY DFAKKYRSIR DLSSSLIGES LLDSSSEKEQ GNEFFKQKKF NEAIDCYSRS
101: IALSPNAVTY ANRAMAYLKI KRYREAEVDC TEALNLDDRY IKAYSRRATA RKELGMIKEA KEDAEFALRL EPESQELKKQ YADIKSLLEK EIIEKATGAM
201: QSTAQELLKT SGLDKKIQKP KTEMTSKPVT LVAKTNRDIV QPVLGSNESS GKKLIENIQP EEKSKEGSMK IPAITEILDS KKVTPGSQSY EKEAKPSDRN
301: GTQPSGPENQ VSKQLELKPS VQELAAHAAS LAMTEASKNI KTPKSAYEFE NSWRSFSGDS ALRSQLLKVT TPSSLPQIFK NALTSPVLVD IIKCVASFFT
401: EDMDLAVKYI ENLTKVPRFN MLVMCLTSTE KNELLKIWED VFCNKATPME YAEVLDKLRS RYCLKQ
Arabidopsis Description
TPR5TPR5 [Source:UniProtKB/TrEMBL;Acc:A0A178WG02]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.