Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX93679 | Canola | mitochondrion | 94.5 | 94.34 |
Bra018737.1-P | Field mustard | mitochondrion | 94.33 | 94.18 |
CDX75952 | Canola | endoplasmic reticulum | 78.17 | 79.49 |
CDY51926 | Canola | endoplasmic reticulum | 78.0 | 79.19 |
VIT_17s0000g02400.t01 | Wine grape | endoplasmic reticulum | 67.33 | 68.47 |
KRH41841 | Soybean | endoplasmic reticulum | 65.83 | 66.84 |
Solyc03g118690.2.1 | Tomato | plastid | 65.33 | 66.44 |
KRH60539 | Soybean | extracellular | 65.0 | 66.44 |
PGSC0003DMT400014757 | Potato | endoplasmic reticulum | 64.83 | 65.93 |
CDX95800 | Canola | endoplasmic reticulum | 78.5 | 61.57 |
Os03t0707900-01 | Rice | plasma membrane | 58.17 | 59.56 |
CDX92180 | Canola | endoplasmic reticulum | 77.67 | 58.4 |
EER91017 | Sorghum | endoplasmic reticulum, golgi | 55.5 | 56.63 |
GSMUA_Achr1P21290_001 | Banana | endoplasmic reticulum | 55.83 | 56.59 |
TraesCS4D01G040700.1 | Wheat | endoplasmic reticulum | 55.17 | 56.29 |
TraesCS4A01G270900.1 | Wheat | endoplasmic reticulum | 54.83 | 55.95 |
Zm00001d033682_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 55.67 | 55.48 |
TraesCS4B01G043200.1 | Wheat | endoplasmic reticulum | 52.83 | 54.1 |
CDY21581 | Canola | cytosol | 48.33 | 48.09 |
CDX69906 | Canola | cytosol, plastid | 47.83 | 47.6 |
Zm00001d013463_P001 | Maize | golgi, plasma membrane, vacuole | 34.83 | 47.29 |
HORVU4Hr1G006870.1 | Barley | plastid | 50.67 | 46.63 |
CDY22653 | Canola | cytosol | 32.0 | 45.5 |
CDY06342 | Canola | cytosol | 31.67 | 45.02 |
CDY03602 | Canola | cytosol, plastid | 20.5 | 40.2 |
CDY46509 | Canola | cytosol | 6.33 | 20.99 |
CDY59872 | Canola | plastid | 15.5 | 17.29 |
CDY04173 | Canola | plastid | 15.33 | 17.1 |
CDY31318 | Canola | cytosol | 15.67 | 15.33 |
CDY46805 | Canola | cytosol | 15.17 | 14.89 |
CDX84527 | Canola | cytosol | 15.17 | 14.77 |
CDY58262 | Canola | cytosol | 14.83 | 14.45 |
CDX70030 | Canola | plastid | 13.5 | 12.52 |
CDX98979 | Canola | plastid | 13.33 | 12.33 |
CDX69905 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
KEGG:00970+6.3.5.7 | Gene3D:1.25.40.10 | MapMan:23.1.2.4 | Gene3D:3.90.1300.10 | GO:A0A078HSB8 | UniProt:A0A078HSB8 |
InterPro:AS_sf | InterPro:Amidase | InterPro:Amidase_dom | EnsemblPlants:CDY40591 | ProteinID:CDY40591 | ProteinID:CDY40591.1 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004040 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0016787 |
EnsemblPlantsGene:GSBRNA2T00071424001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:IPR036928 | PFAM:PF01425 |
PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR11895 | PANTHER:PTHR11895:SF39 | MetaCyc:PWY-5921 | SMART:SM00028 |
SUPFAM:SSF48452 | SUPFAM:SSF75304 | TMHMM:TMhelix | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
UniParc:UPI0004EEC3CA | SEG:seg | : | : | : | : |
Description
BnaC06g02070DBnaC06g02070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSB8]
Coordinates
chrLK032475:+:19231..22453
Molecular Weight (calculated)
65223.7 Da
IEP (calculated)
8.918
GRAVY (calculated)
-0.133
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPKRRHIPA SRASKLCVLL GLGLAGVLLV TKKLKKRVRE DFGAFIEKLL LLPPPQPAPP KAPHPLTALS FALSDLFDVK GYVSGFGHPD WIRTHEAAAS
101: TSPVVSVLVE GGATCVGKTV VGEFAFSISG ETKHYDTPTN PAAPAHIPGG ACSGAAVAVS ANLVDFSLGI DTVGGVRAAA GYCGVLGFRS SQGIVSNAGI
201: IPVSSSLDAV GWFARDPNTL RRVGHVILQL PFEAQRNPRQ IILADDYLQF SKVPVDRIKQ VVIKSAEKLF GRQALKHENL EKYLEAKVPS LKEFCREKAN
301: GDDAKLTTSM LLANVMQLLQ RHEFLQNHGD WINTVNPSID PAVYSQLCKT PELTDEVIEN LNAVRNQMRV AIGSLLKDDG ILVIPTMPSV PPKLGSKEIM
401: SEDYQNRASS LLCVASISGC CQVTVPLGKH DKCPVSVSLI ARHGGDRFLL DTVQKMYASL QENSTLMVNP KSSINTISQE ESAEIAKEKG NQAFKEKQWQ
501: KAIGMYSEAI KLNDENGTYY SNRAAAYLEL GSFRQAEADC TKALALDKKN IKAYLRRGTA REMLGNFKEA IDDFSYALVL EPNNKRAALS ADRLGKVFLQ
101: TSPVVSVLVE GGATCVGKTV VGEFAFSISG ETKHYDTPTN PAAPAHIPGG ACSGAAVAVS ANLVDFSLGI DTVGGVRAAA GYCGVLGFRS SQGIVSNAGI
201: IPVSSSLDAV GWFARDPNTL RRVGHVILQL PFEAQRNPRQ IILADDYLQF SKVPVDRIKQ VVIKSAEKLF GRQALKHENL EKYLEAKVPS LKEFCREKAN
301: GDDAKLTTSM LLANVMQLLQ RHEFLQNHGD WINTVNPSID PAVYSQLCKT PELTDEVIEN LNAVRNQMRV AIGSLLKDDG ILVIPTMPSV PPKLGSKEIM
401: SEDYQNRASS LLCVASISGC CQVTVPLGKH DKCPVSVSLI ARHGGDRFLL DTVQKMYASL QENSTLMVNP KSSINTISQE ESAEIAKEKG NQAFKEKQWQ
501: KAIGMYSEAI KLNDENGTYY SNRAAAYLEL GSFRQAEADC TKALALDKKN IKAYLRRGTA REMLGNFKEA IDDFSYALVL EPNNKRAALS ADRLGKVFLQ
001: MARSPSKHGR DQTQDWELSL KDKDKKIKQQ PANSSNPSSE TFRPSGSGKY DFAKKYRSIR DLSSSLIGES LLDSSSEKEQ GNEFFKQKKF NEAIDCYSRS
101: IALSPNAVTY ANRAMAYLKI KRYREAEVDC TEALNLDDRY IKAYSRRATA RKELGMIKEA KEDAEFALRL EPESQELKKQ YADIKSLLEK EIIEKATGAM
201: QSTAQELLKT SGLDKKIQKP KTEMTSKPVT LVAKTNRDIV QPVLGSNESS GKKLIENIQP EEKSKEGSMK IPAITEILDS KKVTPGSQSY EKEAKPSDRN
301: GTQPSGPENQ VSKQLELKPS VQELAAHAAS LAMTEASKNI KTPKSAYEFE NSWRSFSGDS ALRSQLLKVT TPSSLPQIFK NALTSPVLVD IIKCVASFFT
401: EDMDLAVKYI ENLTKVPRFN MLVMCLTSTE KNELLKIWED VFCNKATPME YAEVLDKLRS RYCLKQ
101: IALSPNAVTY ANRAMAYLKI KRYREAEVDC TEALNLDDRY IKAYSRRATA RKELGMIKEA KEDAEFALRL EPESQELKKQ YADIKSLLEK EIIEKATGAM
201: QSTAQELLKT SGLDKKIQKP KTEMTSKPVT LVAKTNRDIV QPVLGSNESS GKKLIENIQP EEKSKEGSMK IPAITEILDS KKVTPGSQSY EKEAKPSDRN
301: GTQPSGPENQ VSKQLELKPS VQELAAHAAS LAMTEASKNI KTPKSAYEFE NSWRSFSGDS ALRSQLLKVT TPSSLPQIFK NALTSPVLVD IIKCVASFFT
401: EDMDLAVKYI ENLTKVPRFN MLVMCLTSTE KNELLKIWED VFCNKATPME YAEVLDKLRS RYCLKQ
Arabidopsis Description
TPR5TPR5 [Source:UniProtKB/TrEMBL;Acc:A0A178WG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.