CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60539	Soybean	extracellular	94.25	94.89
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	72.93	73.05
AT3G17970.1	Thale cress	endoplasmic reticulum	67.68	67.91
CDX75952	Canola	endoplasmic reticulum	67.68	67.8
Solyc03g118690.2.1	Tomato	plastid	67.68	67.8
CDY51926	Canola	endoplasmic reticulum	67.68	67.68
Bra001692.1-P	Field mustard	endoplasmic reticulum	67.17	67.17
CDX93679	Canola	mitochondrion	67.85	66.72
Bra018737.1-P	Field mustard	mitochondrion	67.68	66.56
PGSC0003DMT400014757	Potato	endoplasmic reticulum	66.16	66.27
CDY40591	Canola	endoplasmic reticulum, golgi	66.84	65.83
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	62.61	62.5
Os03t0707900-01	Rice	plasma membrane	58.88	59.39
EER91017	Sorghum	endoplasmic reticulum, golgi	59.05	59.35
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	59.22	58.14
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	56.85	57.14
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	56.18	56.46
TraesCS4B01G043200.1	Wheat	endoplasmic reticulum	54.65	55.12
KRH58262	Soybean	cytosol	25.38	53.96
CDX95800	Canola	endoplasmic reticulum	66.84	51.63
KRH43896	Soybean	cytosol, endoplasmic reticulum	51.61	51.0
KRG92836	Soybean	cytosol	37.06	50.58
KRH33958	Soybean	cytosol	36.89	50.35
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	37.56	50.23
KRH10544	Soybean	golgi	50.59	50.0
CDX92180	Canola	endoplasmic reticulum	66.84	49.5
KRH58264	Soybean	golgi, plasma membrane	26.73	48.77
HORVU4Hr1G006870.1	Barley	plastid	52.45	47.55
KRG98874	Soybean	mitochondrion	15.23	18.95
KRH46093	Soybean	mitochondrion	16.41	17.86
KRH59629	Soybean	golgi	18.27	17.76
KRH63971	Soybean	cytosol, golgi, peroxisome	18.1	17.26
KRH40976	Soybean	golgi	17.77	17.24
KRH53966	Soybean	cytosol, golgi, peroxisome	18.1	17.23
KRH10653	Soybean	cytosol	16.58	16.14
KRH21697	Soybean	cytosol	16.41	15.98
KRH41039	Soybean	mitochondrion	11.68	14.14
KRH59711	Soybean	plasma membrane	13.37	12.76

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:100786059	MapMan:23.1.2.4	Gene3D:3.90.1300.10	EMBL:ACUP02004781
InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	EnsemblPlantsGene:GLYMA_08G054300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	UniProt:I1KQK6	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928
EnsemblPlants:KRH41841	ProteinID:KRH41841	ProteinID:KRH41841.1	ProteinID:KRH41842.1	PFAM:PF01425	PFAM:PF07719
PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF39	MetaCyc:PWY-5921
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI00023380E8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:4190544..4197141

Molecular Weight (calculated)

63822.7 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.123

Length

591 amino acids

Sequence
(BLAST)

001: MTSQSAKNLL VLLGLGLAGI VLITRKLKKS VRKDLGAFIE KLQLLPPPQP APPKAPHPLT ALTFALSDLF DIEGHVSTFG HPEWARTHEP ASSTAPAVSA
101: LVEGGATCVA TTVLDDLALG IGGENKHYGT PTNPAVPARV PGGSSSGAAV AVAADFVDFA LGIDTVGGVR VPAGFCGILG FRPSHGAVSH LGIIPISTSL
201: DTVGWFAKDP NILRRVGHIL LQAPFAMQRS PRQIVIADDC FQHINVPLDR SSQVVVKTTE KLFGRQVLKH INLGDYLSSR VPSLKGCSGQ KTNGEVKASA
301: LKLLANIMQS LQRHEFRLKH DEWMNTVKPE LHPGVSAQLH EKFEVSDAEI ENSKSVRSEM CAAVNSLLKD EGILVIPTVA DPPPKLGGKE ILSEDYQSRA
401: FSLLSIASIS GCCQVSIPLG FYDKYPVSVS LIARHGGDRF LLDTLQTVYT TLQEQADIAS KSKSSGNAVS KEQSAEIAKE KGNQAYKDKQ WQKAIGFYTE
501: AIKLCGDNAT YYSNRAQAYL GLGSYLQAVE DCTKAISLDK KNVKAYFRRG TAREMLGYYK EAIDDFKHAL VLEPTNKRAA SAAERLRKLF Q

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.