CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

extracellular: 20458513

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41841	Soybean	endoplasmic reticulum	94.89	94.25
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	72.06	71.69
Solyc03g118690.2.1	Tomato	plastid	67.63	67.29
AT3G17970.1	Thale cress	endoplasmic reticulum	67.29	67.06
CDX75952	Canola	endoplasmic reticulum	67.12	66.78
CDY51926	Canola	endoplasmic reticulum	67.12	66.67
PGSC0003DMT400014757	Potato	endoplasmic reticulum	66.61	66.27
Bra001692.1-P	Field mustard	endoplasmic reticulum	66.44	65.99
CDX93679	Canola	mitochondrion	67.29	65.72
Bra018737.1-P	Field mustard	mitochondrion	67.12	65.56
CDY40591	Canola	endoplasmic reticulum, golgi	66.44	65.0
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	61.84	61.32
Os03t0707900-01	Rice	plasma membrane	59.28	59.39
EER91017	Sorghum	endoplasmic reticulum, golgi	58.94	58.84
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	59.11	57.64
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	57.07	56.97
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	56.39	56.29
TraesCS4B01G043200.1	Wheat	endoplasmic reticulum	54.86	54.95
KRH58262	Soybean	cytosol	25.21	53.24
CDX95800	Canola	endoplasmic reticulum	66.61	51.11
KRH43896	Soybean	cytosol, endoplasmic reticulum	51.28	50.33
KRG92836	Soybean	cytosol	36.97	50.12
KRH33958	Soybean	cytosol	36.8	49.88
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	37.14	49.32
KRH10544	Soybean	golgi	50.09	49.16
CDX92180	Canola	endoplasmic reticulum	66.61	49.0
HORVU4Hr1G006870.1	Barley	plastid	53.32	48.01
KRH58264	Soybean	golgi, plasma membrane	26.24	47.53
KRG98874	Soybean	mitochondrion	15.33	18.95
KRH46093	Soybean	mitochondrion	16.35	17.68
KRH59629	Soybean	golgi	17.72	17.11
KRH40976	Soybean	golgi	17.38	16.75
KRH63971	Soybean	cytosol, golgi, peroxisome	17.55	16.61
KRH53966	Soybean	cytosol, golgi, peroxisome	17.55	16.59
KRH21697	Soybean	cytosol	15.84	15.32
KRH10653	Soybean	cytosol	15.67	15.16
KRH41039	Soybean	mitochondrion	11.93	14.34
KRH59711	Soybean	plasma membrane	13.46	12.76

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:100776197	Gene3D:3.90.1300.10	MapMan:35.1	EMBL:ACUP02003367
InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	EnsemblPlantsGene:GLYMA_05G246300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0016787	UniProt:I1K5C0	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	EnsemblPlants:KRH60539	ProteinID:KRH60539	ProteinID:KRH60539.1
PFAM:PF01425	PFAM:PF07719	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895
PANTHER:PTHR11895:SF39	MetaCyc:PWY-5921	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI000233A58A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:41993104..42000026

Molecular Weight (calculated)

63800.7 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.141

Length

587 amino acids

Sequence
(BLAST)

001: MAKNLLVLLG LGLAGIVLIT RKLNKSVRED FGAFIHKLQL LPPPQPSPPK APHPLTSLTF ALSDLFHIHG HVPSFGHPDW ARTHEPSSST APAVSALVEG
101: GATCVATTVL DDLALGIGGE NKHFGTPTNP AVPARVPGGS SSGAAVAVAA NFVDFALGID TTGGVRVPAG FCGILGFRPS HGAVSHMGII PISTSLDTVG
201: WFAKDPNILR RVGHILLQAP FVMQRSPRQI VIADDCFQHI NVPLDRSSQV VVKATEKLFG RQVLKHINLG DYLSSRVPSL KGCSGQKPNG EVKASSLKLL
301: AHIMQFLQRH EFRLKHDDWM NTVKPDLHPG VSAQLHEKFE VSDAEIENSK SVRSEMRAAV NSLLKDEGIL VIPTVADPPP KLGGKEILSE DYQSRAFSLL
401: SIASISGCCQ VSIPLGFYDK YPVSVSLIAR HGGDRFLLDT LQTVYTTLQE QADIASKSKS SGNVVSKEQS AEIAKEKGNQ AYKDKQWQKA IGFYTEAIKL
501: CGDNATYYSN RAQAYLELES YLQAVEDCTK AISLDKKNVK AYFRRGTARQ MLGYYKEAID DFKHALVLEP TNKRAASAAE RLRKLFQ

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.