Factsheet for TraesCS4B01G043200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	95.56	95.24
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	94.54	94.22
Os03t0707900-01	Rice	plasma membrane	84.81	84.81
EER91017	Sorghum	endoplasmic reticulum, golgi	80.55	80.27
HORVU4Hr1G006870.1	Barley	plastid	88.91	79.91
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	80.2	78.07
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	48.98	64.93
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	60.07	59.46
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	59.04	58.64
CDY51926	Canola	endoplasmic reticulum	57.68	57.19
CDX75952	Canola	endoplasmic reticulum	57.34	56.95
Solyc03g118690.2.1	Tomato	plastid	57.34	56.95
Bra001692.1-P	Field mustard	endoplasmic reticulum	57.17	56.68
PGSC0003DMT400014757	Potato	endoplasmic reticulum	56.31	55.93
AT3G17970.1	Thale cress	endoplasmic reticulum	55.8	55.52
KRH60539	Soybean	extracellular	54.95	54.86
KRH41841	Soybean	endoplasmic reticulum	55.12	54.65
Bra018737.1-P	Field mustard	mitochondrion	55.46	54.08
CDX93679	Canola	mitochondrion	55.29	53.91
CDY40591	Canola	endoplasmic reticulum, golgi	54.1	52.83
CDX95800	Canola	endoplasmic reticulum	57.51	44.05
CDX92180	Canola	endoplasmic reticulum	57.17	41.98
TraesCS6B01G349000.1	Wheat	plastid	43.52	41.87
TraesCS2B01G624200.1	Wheat	cytosol	28.5	37.11
TraesCS2B01G603900.1	Wheat	cytosol	26.28	34.84
TraesCS1B01G443700.1	Wheat	golgi	18.6	17.87
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	15.7	17.01
TraesCS2B01G053700.1	Wheat	mitochondrion, nucleus, peroxisome	17.06	16.23
TraesCS2B01G053800.1	Wheat	cytosol	16.21	15.6
TraesCS3B01G379500.5	Wheat	golgi, vacuole	12.29	11.3

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.1.2.4	Gene3D:3.90.1300.10	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0016020	GO:GO:0016787	GO:GO:0031359	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR036928	PFAM:PF01425	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR11895	PANTHER:PTHR11895:SF39	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304	TMHMM:TMhelix
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS4B01G043200	EnsemblPlants:TraesCS4B01G043200.1	SEG:seg

Description

No Description!

Coordinates

chr4B:-:31517658..31529129

Molecular Weight (calculated)

61031.1 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.057

Length

586 amino acids

Sequence
(BLAST)

001: MASSTAANLW VLLGLGIAGV LLAAKRLKRP XXXXXXXXXX XXXXXXXXXX PQARHPLTDL CFAIADAFHV SGYITSFGSL EWAKTHDAAT QTSLVVSTLV
101: DGGAICVGKT VIDEMAYSIH GENKHFGTPT NPAASDRVPG GCSSGSAVAV AGGMVDFALG IDSIGGVRVP GGYCGVLAFR PSHAVISNSG VIPVAPSLDT
201: IGWFAKDPIV LRRVGHLLLK LSYTDIRLPR HFYIADDCFE ISKIPARRLT QVVTKSVEKL YGRQVLSHVN LGNYLASKIP SLRNYSNGQK NGDSKFSSLQ
301: ALSSAMQLLH KHEFRDQHNE WINSAKSAVD ASIVGNLSDD GDSTINIVQD ARKEVRLALN ALLKDDGILV IPTALGCPPK INARELSSTS YNSETLCLQS
401: LSSMSGCCQV TVPIGTHDKC PISVSFIARH GGDRFLLDTT QAIYATIQEQ VEILAKSNPS SKEAMSEEAA EAAKEKGNSA FKEKQWQKAI NLYTEAIKLN
501: GKVATYYSNR AAAFLELANY RQAETDCTSA IDIDPKIVKA YLRRGTAREM LGYYKEAVDD FSHALVLEPM NKTAGVAINR LKKLFP

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.