CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
cytosol 1
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033682_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	95.24	93.02
Os03t0707900-01	Rice	plasma membrane	84.69	84.98
TraesCS4D01G040700.1	Wheat	endoplasmic reticulum	83.84	83.84
Zm00001d013463_P001	Maize	golgi, plasma membrane, vacuole	62.07	82.58
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	82.14	82.14
TraesCS4B01G043200.1	Wheat	endoplasmic reticulum	80.27	80.55
HORVU4Hr1G006870.1	Barley	plastid	76.19	68.71
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	63.61	63.39
GSMUA_Achr1P21290_001	Banana	endoplasmic reticulum	63.78	63.34
Solyc03g118690.2.1	Tomato	plastid	61.22	61.02
PGSC0003DMT400014757	Potato	endoplasmic reticulum	60.2	60.0
CDY51926	Canola	endoplasmic reticulum	59.69	59.39
CDX75952	Canola	endoplasmic reticulum	59.35	59.15
KRH41841	Soybean	endoplasmic reticulum	59.35	59.05
KRH60539	Soybean	extracellular	58.84	58.94
Bra001692.1-P	Field mustard	endoplasmic reticulum	59.18	58.88
AT3G17970.1	Thale cress	endoplasmic reticulum	58.5	58.4
Bra018737.1-P	Field mustard	mitochondrion	58.5	57.24
CDX93679	Canola	mitochondrion	57.99	56.74
CDY40591	Canola	endoplasmic reticulum, golgi	56.63	55.5
EER97555	Sorghum	cytosol	34.35	46.22
CDX95800	Canola	endoplasmic reticulum	59.52	45.75
KXG30729	Sorghum	plastid	45.92	43.97
CDX92180	Canola	endoplasmic reticulum	59.01	43.48
EES11532	Sorghum	plastid	14.97	16.27
EES11732	Sorghum	cytosol, nucleus, plastid	16.5	15.7
OQU82976	Sorghum	peroxisome	12.59	13.94
KXG23065	Sorghum	plastid	16.67	13.17
KXG28572	Sorghum	golgi	13.78	12.29

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	MapMan:23.1.2.4	Gene3D:3.90.1300.10	EntrezGene:8063401	InterPro:AS_sf
InterPro:Amidase	InterPro:Amidase_dom	UniProt:C5WNR1	EnsemblPlants:EER91017	ProteinID:EER91017	ProteinID:EER91017.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0031359	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR036928	PFAM:PF01425	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895
PANTHER:PTHR11895:SF39	MetaCyc:PWY-5921	SMART:SM00028	EnsemblPlantsGene:SORBI_3001G120500	SUPFAM:SSF48452	SUPFAM:SSF75304
unigene:Sbi.11867	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A82570
RefSeq:XP_002464019.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:9351681..9364029

Molecular Weight (calculated)

63440.0 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.103

Length

588 amino acids

Sequence
(BLAST)

001: MASSGAAANL WVLLGLGIAG VFLAARRLRR PARPDHGAFI ARLELLPPPQ PPPPQAPHPL TGLCFAIADA LHVSGYITSF GSLEWAKTHD AEVQTSPVVS
101: ALVDSGAICV GKTVIDEMAY SIHGENKYFD TPTNPATPDR VPGGCSSGSA VAVAGGMVDF ALGIDSIGGV RVPGAYCGVL AFRPSHAVVS SSGVIPVAPS
201: LDTIGWFARD PSVLHRVGHL LLRLPYAGIR QPRNFYIADD CFGLSKIPVR RLTQVVTKSV EKLFGRQVRH VNLENYLSSR ISGLSNYSNG HKNGDSKFPL
301: LLALCNAMRS LHKREFKDQH MEWINSVKPA VDARIVSDLS EDGDSDIDGC QDARKEARSA LSELLKDDGI LVIPTALGCP PKLNAKELSS ESYNSQTLGL
401: LSLASMSGCC QVSIPLGTHD KCPISVSLIA RHGGDRFLLD TTQTMYTTIQ EQVEILAKSS VSSKQAMNEE AAEAAKEKGN AAFKEKQWQK AVNFYTEAIK
501: LNGKVATYYS NRAAAFLELT SYRQAEADCT SAIDLDPKSV KAYLRRGTAR EMLGYYKDAV DDFNHALVLE PMNKTAGVAI NRLKKLFP

Best Arabidopsis Sequence Match ( AT3G17970.1 )
(BLAST)

001: MASQAANLWV LLGLGLAGIL MLTKKLKKTV REDFGAFIDK LMLLPPPQPA PPKAPHPLTG LTFAVSDVFD ITGYVTGFGH PDWVRTHEAA SSTSPVVSTL
101: VEGGATCVGK TVVDEFAFSI SGENKHYDSP TNPAAPTRIP GGACSGAAVA VATNAVDFAL GIDTVGGVRV PAGYCGVLGF KSSYGAISNT GIIPVSSSLD
201: SVGWFARDPN TLRRVGHVLL QLPFATQRNP RQIILADDCF QLLKIPVDRI TQVVTKSAEK LFGRQLLKHQ NLETYFETKV PSLKEFARTK AIANTKVSTS
301: RLLANVMQLL QRHEFLQNHG DWINTVKPAI DPVILSQVCE NPELTNEETE NLNAIRNETR VAIGSLLKDD GILVIPTLPA VPPKLGSKEI TSEDYQNRAS
401: SLLSIASISG CCQVTVPLGH HEKCPISVSF IGRHGGDRFL LDTVQTMYPS LQEYSSIVTD PKSSKKAITK EESAEIAKEK GNQAFKEKLW QKAIGLYSEA
501: IKLSDNNATY YSNRAAAYLE LGGFLQAEED CTKAITLDKK NVKAYLRRGT AREMLGDCKG AIEDFRYALV LEPNNKRASL SAERLRKFQ

Arabidopsis Description

OEP64Outer envelope protein 64, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.