Factsheet for PGSC0003DMT400074185

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006250.1.1	Tomato	plasma membrane	96.88	96.88
VIT_12s0057g01380.t01	Wine grape	plastid	81.25	80.89
PGSC0003DMT400057335	Potato	plasma membrane	68.75	66.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400074185	EnsemblPlantsGene:PGSC0003DMG400028831	EntrezGene:102602848	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	PGSC:PGSC0003DMG400028831	RefSeq:XP_006352003.1	TMHMM:TMhelix
UniParc:UPI000296BB25	UniProt:M1CTB5	MapMan:35.2	:	:	:

Description

Protein transport protein SFT2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028831]

Coordinates

chr12:-:6065681..6071199

Molecular Weight (calculated)

24462.8 Da

IEP (calculated)

9.111

GRAVY (calculated)

0.504

Length

224 amino acids

Sequence
(BLAST)

001: MHKTAQSWFT GGPSNDLEKT PSSLLADWNA YAATQDEGSS SDLGFDLEAA VRTANDKFSG TFNVVTKGVR DLPGSFQFAT SNVPSGKSLM YFGLFLAAGV
101: FFIFIAFTMF LPVMVLMPQK FAICFTIGCA FIIGSFFALK GPKNQLTHMT SKERLPFTAL FIGSMVGTIY VSMVLHSYIL SVLFSVIQVL ALSYYVISYF
201: PGGSVGMRFL SSTLTSSIFR CFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.