Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 5
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P08270_001 | |
| GSMUA_Achr4P15460_001 | |
| GSMUA_Achr6P14800_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G21690.1 | GSMUA_Achr4P08270_001 | AT3G16310.1 | 21798944 |
| AT3G21690.1 | GSMUA_Achr4P15460_001 | AT3G16310.1 | 21798944 |
| AT3G21690.1 | GSMUA_Achr6P14800_001 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P14000_001 | Banana | peroxisome, plasma membrane, vacuole | 92.14 | 71.98 |
| GSMUA_Achr4P23760_001 | Banana | plasma membrane | 79.61 | 70.43 |
| GSMUA_Achr9P11610_001 | Banana | plasma membrane | 83.05 | 68.28 |
| TraesCS3D01G506200.1 | Wheat | cytosol, plasma membrane, vacuole | 82.31 | 68.09 |
| TraesCS3A01G499300.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.31 | 67.4 |
| EER91319 | Sorghum | cytosol, peroxisome, plasma membrane | 83.29 | 67.4 |
| TraesCS3B01G562500.1 | Wheat | cytosol, plasma membrane, vacuole | 81.33 | 67.28 |
| Zm00001d033061_P002 | Maize | cytosol, plasma membrane, vacuole | 81.33 | 67.14 |
| Zm00001d033063_P001 | Maize | vacuole | 82.31 | 67.0 |
| TraesCS3D01G506100.1 | Wheat | plasma membrane | 81.82 | 66.87 |
| CDY33131 | Canola | golgi, plasma membrane, vacuole | 28.75 | 66.48 |
| TraesCS3A01G499200.1 | Wheat | plasma membrane | 81.33 | 66.47 |
| Os03t0572900-01 | Rice | plasma membrane | 81.57 | 66.4 |
| TraesCS3B01G562400.2 | Wheat | plasma membrane | 81.08 | 66.27 |
| Zm00001d013809_P002 | Maize | plasma membrane | 80.84 | 66.2 |
| KRH26788 | Soybean | plasma membrane | 81.57 | 65.87 |
| TraesCS3D01G506500.3 | Wheat | cytosol, peroxisome, plasma membrane | 79.85 | 65.13 |
| Solyc07g052380.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 80.34 | 65.01 |
| TraesCS3B01G563700.1 | Wheat | cytosol, peroxisome, plasma membrane | 79.12 | 64.79 |
| TraesCS3A01G500000.1 | Wheat | cytosol, peroxisome, plasma membrane | 79.12 | 64.79 |
| TraesCS3B01G563400.4 | Wheat | cytosol, peroxisome, plasma membrane | 79.36 | 64.73 |
| AT3G21690.1 | Thale cress | cytosol, peroxisome, plasma membrane | 80.34 | 64.62 |
| TraesCS3B01G563200.2 | Wheat | cytosol, peroxisome, plasma membrane | 79.12 | 64.53 |
| TraesCS3B01G563500.1 | Wheat | cytosol, peroxisome, plasma membrane | 79.12 | 64.53 |
| TraesCS3A01G499800.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.62 | 64.52 |
| TraesCS3D01G506700.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.87 | 64.46 |
| Bra031297.1-P | Field mustard | cytosol, peroxisome, vacuole | 78.62 | 64.13 |
| TraesCS3B01G563100.2 | Wheat | cytosol, peroxisome, plasma membrane | 78.87 | 64.07 |
| PGSC0003DMT400065544 | Potato | cytosol, peroxisome, plasma membrane | 76.17 | 64.05 |
| Bra031296.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 79.36 | 63.96 |
| VIT_12s0059g02180.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 79.36 | 63.71 |
| Bra001840.1-P | Field mustard | plasma membrane | 71.5 | 63.68 |
| CDY33129 | Canola | cytosol, peroxisome, plasma membrane | 78.87 | 63.56 |
| VIT_12s0059g02220.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 79.12 | 63.51 |
| KRH56125 | Soybean | plasma membrane | 80.59 | 63.44 |
| CDY24250 | Canola | cytosol, peroxisome, plasma membrane | 49.14 | 63.09 |
| CDX92916 | Canola | cytosol, plasma membrane, vacuole | 78.13 | 62.97 |
| CDY38631 | Canola | cytosol, peroxisome, vacuole | 79.12 | 62.89 |
| Solyc12g005850.1.1 | Tomato | plasma membrane | 79.12 | 62.89 |
| CDY65669 | Canola | cytosol, peroxisome, plasma membrane | 76.41 | 62.83 |
| CDY69153 | Canola | cytosol, peroxisome, plasma membrane | 48.89 | 62.78 |
| CDY33130 | Canola | cytosol, peroxisome, vacuole | 47.42 | 62.66 |
| CDY39494 | Canola | cytosol, peroxisome, plasma membrane | 79.12 | 62.65 |
| Bra023866.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 74.94 | 62.63 |
| HORVU3Hr1G110460.3 | Barley | cytosol, peroxisome | 79.12 | 62.4 |
| CDY19294 | Canola | cytosol, peroxisome, plasma membrane | 78.62 | 62.26 |
| CDY39493 | Canola | cytosol, peroxisome, plasma membrane | 76.9 | 62.23 |
| VIT_12s0059g02160.t01 | Wine grape | plasma membrane | 77.4 | 61.16 |
| Bra023867.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 74.2 | 60.4 |
| CDY19295 | Canola | cytosol, peroxisome, plasma membrane | 43.49 | 58.22 |
| PGSC0003DMT400022543 | Potato | plasma membrane | 73.71 | 57.25 |
| KRH25385 | Soybean | plasma membrane | 61.18 | 56.46 |
| GSMUA_Achr7P11770_001 | Banana | plasma membrane | 50.37 | 47.79 |
| GSMUA_Achr7P04510_001 | Banana | plasma membrane | 44.96 | 45.98 |
| GSMUA_Achr3P21260_001 | Banana | plasma membrane | 50.61 | 44.78 |
| VIT_12s0059g02230.t01 | Wine grape | cytosol, nucleus, plasma membrane | 75.43 | 44.62 |
| GSMUA_Achr8P18130_001 | Banana | mitochondrion, plasma membrane, vacuole | 51.35 | 42.83 |
| GSMUA_Achr7P12820_001 | Banana | cytosol | 45.45 | 42.73 |
| GSMUA_Achr1P15340_001 | Banana | plasma membrane | 49.63 | 42.53 |
| GSMUA_Achr10P... | Banana | cytosol, peroxisome, plasma membrane | 49.88 | 42.2 |
| GSMUA_Achr9P26370_001 | Banana | plasma membrane | 48.16 | 42.06 |
| GSMUA_Achr4P22990_001 | Banana | plasma membrane | 51.6 | 41.75 |
| GSMUA_Achr8P03000_001 | Banana | plasma membrane | 50.61 | 41.37 |
| GSMUA_Achr5P01870_001 | Banana | plasma membrane | 47.17 | 40.68 |
| GSMUA_Achr2P03560_001 | Banana | cytosol, peroxisome, plasma membrane | 49.88 | 40.6 |
| GSMUA_Achr6P04190_001 | Banana | plasma membrane | 42.75 | 40.28 |
| GSMUA_Achr4P05060_001 | Banana | peroxisome | 50.37 | 40.04 |
| GSMUA_Achr7P21610_001 | Banana | plasma membrane | 47.67 | 40.0 |
| GSMUA_AchrUn_... | Banana | golgi, peroxisome, vacuole | 49.39 | 39.72 |
Protein Annotations
| MapMan:24.2.4.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006855 | GO:GO:0008150 | GO:GO:0015238 | GO:GO:0015297 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr6G00360_001 | EnsemblPlants:GSMUA_Achr6P00360_001 | EnsemblPlants:GSMUA_Achr6T00360_001 | UniProt:M0T2Y4 | InterPro:MATE_fam |
| PFAM:PF01554 | PANTHER:PTHR11206 | PANTHER:PTHR11206:SF200 | TIGRFAMs:TIGR00797 | TMHMM:TMhelix | UniParc:UPI0002955C89 |
| SEG:seg | : | : | : | : | : |
Description
Protein TRANSPARENT TESTA 12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00360_001]
Coordinates
chr6:-:260375..263663
Molecular Weight (calculated)
43725.1 Da
IEP (calculated)
8.028
GRAVY (calculated)
0.795
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTQIFSGHL GNLELAAASL GNTGIQIFAY GLMLGMGSAV ETLCGQAYGA HKYEMLGVYL QRSTVLLMAT GVPLAAIYAL SRPILVLLGE SPEIAKAASI
101: FVYGLIPQIF AYAANFPIQK FLQAQSIVAP SAYISAATLV VHLLLSWVVV YKIGLGLLGA SLALSLSWWI IVGAQFVYIS SSSRCHFTWT GFTWQAFSGL
201: PEFFRLSIAS AVMLCLEAWY FQILVLIAGL LDNPELALDS LSVCMTLSGW IFMISVGFNA AASVRVSNEL GAGNPKSAAF SVVVVTVMSF IVVARAVSDL
301: CPLLATTLIL NGIQPVLSGV AVGCGWQAFV AYVNVGCYYI IGVPFGSLLG FKFGLGAKGI WGGMIGGTFM QTLILLWVTF RTDWNKEVEE AKKRLNKWED
401: KKEPLLS
101: FVYGLIPQIF AYAANFPIQK FLQAQSIVAP SAYISAATLV VHLLLSWVVV YKIGLGLLGA SLALSLSWWI IVGAQFVYIS SSSRCHFTWT GFTWQAFSGL
201: PEFFRLSIAS AVMLCLEAWY FQILVLIAGL LDNPELALDS LSVCMTLSGW IFMISVGFNA AASVRVSNEL GAGNPKSAAF SVVVVTVMSF IVVARAVSDL
301: CPLLATTLIL NGIQPVLSGV AVGCGWQAFV AYVNVGCYYI IGVPFGSLLG FKFGLGAKGI WGGMIGGTFM QTLILLWVTF RTDWNKEVEE AKKRLNKWED
401: KKEPLLS
001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
Arabidopsis Description
DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.