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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EES02290
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G21690.1 EES02290 AT3G16310.1 21798944
AT3G21690.1 EES19830 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d013809_P002 Maize plasma membrane 89.86 90.95
Zm00001d033063_P001 Maize vacuole 89.86 90.4
Zm00001d033061_P002 Maize cytosol, plasma membrane, vacuole 87.48 89.25
Os03t0572900-01 Rice plasma membrane 87.08 87.6
TraesCS3B01G562500.1 Wheat cytosol, plasma membrane, vacuole 83.9 85.77
TraesCS3A01G499300.1 Wheat cytosol, peroxisome, plasma membrane 84.29 85.31
TraesCS3D01G506200.1 Wheat cytosol, plasma membrane, vacuole 82.9 84.76
GSMUA_Achr6P00360_001 Banana vacuole 67.4 83.29
TraesCS3D01G506100.1 Wheat plasma membrane 81.91 82.73
TraesCS3A01G499200.1 Wheat plasma membrane 81.71 82.53
TraesCS3B01G562400.2 Wheat plasma membrane 81.71 82.53
TraesCS3B01G563400.4 Wheat cytosol, peroxisome, plasma membrane 80.72 81.36
TraesCS3A01G500000.1 Wheat cytosol, peroxisome, plasma membrane 80.12 81.09
TraesCS3D01G506500.3 Wheat cytosol, peroxisome, plasma membrane 80.32 80.96
TraesCS3D01G506700.1 Wheat cytosol, peroxisome, plasma membrane 79.92 80.72
TraesCS3B01G563700.1 Wheat cytosol, peroxisome, plasma membrane 79.52 80.48
TraesCS3A01G499800.1 Wheat cytosol, peroxisome, plasma membrane 79.32 80.44
TraesCS3B01G563500.1 Wheat cytosol, peroxisome, plasma membrane 79.52 80.16
TraesCS3B01G563100.2 Wheat cytosol, peroxisome, plasma membrane 79.72 80.04
HORVU3Hr1G110460.3 Barley cytosol, peroxisome 81.71 79.65
TraesCS3B01G563200.2 Wheat cytosol, peroxisome, plasma membrane 78.93 79.56
GSMUA_Achr2P14000_001 Banana peroxisome, plasma membrane, vacuole 78.33 75.62
CDY33131 Canola golgi, plasma membrane, vacuole 25.65 73.3
KXG38133 Sorghum cytosol, peroxisome, vacuole 75.15 73.26
Solyc07g052380.2.1 Tomato cytosol, peroxisome, plasma membrane 72.56 72.56
PGSC0003DMT400065544 Potato cytosol, peroxisome, plasma membrane 69.58 72.31
EER91321 Sorghum plasma membrane 71.97 72.26
KRH26788 Soybean plasma membrane 72.17 72.02
VIT_12s0059g02180.t01 Wine grape cytosol, peroxisome, plasma membrane 72.56 71.99
Bra001840.1-P Field mustard plasma membrane 65.01 71.55
VIT_12s0059g02220.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 71.97 71.4
CDY24250 Canola cytosol, peroxisome, plasma membrane 44.93 71.29
CDY69153 Canola cytosol, peroxisome, plasma membrane 44.73 70.98
AT3G21690.1 Thale cress cytosol, peroxisome, plasma membrane 71.37 70.95
Solyc12g005850.1.1 Tomato plasma membrane 72.17 70.9
Bra031296.1-P Field mustard cytosol, peroxisome, plasma membrane 71.17 70.89
GSMUA_Achr4P23760_001 Banana plasma membrane 64.81 70.87
CDY33129 Canola cytosol, peroxisome, plasma membrane 70.97 70.69
Bra031297.1-P Field mustard cytosol, peroxisome, vacuole 69.98 70.54
CDX92916 Canola cytosol, plasma membrane, vacuole 70.58 70.3
Bra023866.1-P Field mustard cytosol, peroxisome, plasma membrane 67.79 70.02
CDY38631 Canola cytosol, peroxisome, vacuole 71.17 69.92
CDY39494 Canola cytosol, peroxisome, plasma membrane 71.37 69.84
KXG37120 Sorghum plasma membrane 69.98 69.7
CDY65669 Canola cytosol, peroxisome, plasma membrane 68.59 69.7
CDY19294 Canola cytosol, peroxisome, plasma membrane 70.97 69.46
KRH56125 Soybean plasma membrane 71.37 69.44
CDY39493 Canola cytosol, peroxisome, plasma membrane 68.99 68.99
CDY33130 Canola cytosol, peroxisome, vacuole 41.95 68.51
EER97294 Sorghum endoplasmic reticulum, peroxisome, plasma membrane 67.0 67.94
VIT_12s0059g02160.t01 Wine grape plasma membrane 69.18 67.57
Bra023867.1-P Field mustard cytosol, peroxisome, plasma membrane 66.6 67.0
EER93896 Sorghum cytosol, peroxisome, plasma membrane 69.78 66.98
CDY19295 Canola cytosol, peroxisome, plasma membrane 40.16 66.45
KRH25385 Soybean plasma membrane 56.46 64.4
PGSC0003DMT400022543 Potato plasma membrane 66.4 63.74
VIT_12s0059g02230.t01 Wine grape cytosol, nucleus, plasma membrane 68.79 50.29
OQU87609 Sorghum plasma membrane 40.36 49.63
OQU79625 Sorghum golgi, plasma membrane, vacuole 46.12 45.4
EER96893 Sorghum cytosol, peroxisome, vacuole 42.54 44.86
EES15223 Sorghum plasma membrane 44.73 44.29
KXG35815 Sorghum plasma membrane 42.15 43.98
OQU80740 Sorghum cytosol, peroxisome, plasma membrane 44.53 43.75
EER96891 Sorghum cytosol, peroxisome, plasma membrane 42.15 43.62
KXG25339 Sorghum cytosol, peroxisome, plasma membrane 42.74 43.43
EES15585 Sorghum cytosol, peroxisome, plasma membrane 45.13 43.24
OQU86679 Sorghum cytosol, peroxisome, plasma membrane 43.34 43.17
OQU85978 Sorghum plasma membrane 35.19 42.65
EES09180 Sorghum cytosol, peroxisome, plasma membrane 44.73 42.53
EER91211 Sorghum plasma membrane 41.55 42.39
OQU93093 Sorghum cytosol, peroxisome, plasma membrane 44.14 42.29
OQU85979 Sorghum cytosol, peroxisome, vacuole 42.54 42.21
OQU80697 Sorghum cytosol 43.94 41.54
OQU92001 Sorghum peroxisome 39.16 37.31
KXG38740 Sorghum plasma membrane 37.57 37.13
Protein Annotations
MapMan:24.2.4.1.1EntrezGene:8065644UniProt:C5WUC5ncoils:CoilEnsemblPlants:EER91319ProteinID:EER91319
ProteinID:EER91319.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855
GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085
InterPro:MATE_famPFAM:PF01554PANTHER:PTHR11206PANTHER:PTHR11206:SF200EnsemblPlantsGene:SORBI_3001G185400unigene:Sbi.6336
TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI0001A8231DRefSeq:XP_002464321.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:15851216..15857296
Molecular Weight (calculated)
54050.7 Da
IEP (calculated)
7.037
GRAVY (calculated)
0.733
Length
503 amino acids
Sequence
(BLAST)
001: MAGGDEAHGG ASGRLESILT AEADASSPWP WARRAWAAAS IELRLLTRLA APAVVMYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ IFAYGLMLGM
101: GSAVETLCGQ AYGAQKYDML GIYLQRSAVL LCATGVPLAV VYAFSEPILV FLGQSPEIAR AASIFVYGLI PQIFAYAINF PIQKFMQAQS IVLPSAYIST
201: ATLALHLLLS WVVVYKAGLG LLGASLVLSL SWWLIVAAQF AYIVVSPKCR HTWTGFTFQA FSGLWDFLKL SAASAVMLCL ETWYFQVLVL IAGLLPNPEL
301: ALDALSVCMT ISGWVFMISV GFNAAASVRV SNELGAGHPK SAYFSVWVVT AVSTLISVML SIVILCLRNY ISYLFTEGEV VSNAVADLCP LLAITLILNG
401: IQPVLSGVAV GCGWQQFVAY VNIGCYYIVG VPLGAILGFV FKLGVKGIWG GMIGGTCMQT AILLWVTLRT DWNKEVEEAQ KRLHKWEDKK TTEPLLAGVG
501: NGN
Best Arabidopsis Sequence Match ( AT3G21690.1 )
(BLAST)
001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
Arabidopsis Description
DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.