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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EES02290
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G21690.1 EES02290 AT3G16310.1 21798944
AT3G21690.1 EES19830 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0570800-01 Rice cytosol, peroxisome, plasma membrane 86.63 86.8
GSMUA_Achr9P11610_001 Banana plasma membrane 75.25 76.16
KXG38133 Sorghum cytosol, peroxisome, vacuole 74.25 72.09
EER91319 Sorghum cytosol, peroxisome, plasma membrane 72.26 71.97
KRH26788 Soybean plasma membrane 70.06 69.64
KXG37120 Sorghum plasma membrane 69.46 68.91
CDY69153 Canola cytosol, peroxisome, plasma membrane 43.51 68.77
CDY24250 Canola cytosol, peroxisome, plasma membrane 43.51 68.77
AT3G21690.1 Thale cress cytosol, peroxisome, plasma membrane 69.06 68.38
Bra001840.1-P Field mustard plasma membrane 62.28 68.27
CDY33130 Canola cytosol, peroxisome, vacuole 41.92 68.18
Bra031296.1-P Field mustard cytosol, peroxisome, plasma membrane 68.26 67.72
VIT_12s0059g02180.t01 Wine grape cytosol, peroxisome, plasma membrane 68.46 67.65
EER97294 Sorghum endoplasmic reticulum, peroxisome, plasma membrane 66.67 67.34
Bra031297.1-P Field mustard cytosol, peroxisome, vacuole 67.07 67.33
CDY33129 Canola cytosol, peroxisome, plasma membrane 67.86 67.33
Solyc07g052380.2.1 Tomato cytosol, peroxisome, plasma membrane 67.47 67.2
CDX92916 Canola cytosol, plasma membrane, vacuole 67.47 66.93
KRH56125 Soybean plasma membrane 69.06 66.92
VIT_12s0059g02220.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 67.66 66.86
CDY65669 Canola cytosol, peroxisome, plasma membrane 65.87 66.67
CDY39494 Canola cytosol, peroxisome, plasma membrane 68.26 66.54
Bra023866.1-P Field mustard cytosol, peroxisome, plasma membrane 64.67 66.53
PGSC0003DMT400065544 Potato cytosol, peroxisome, plasma membrane 64.27 66.53
CDY33131 Canola golgi, plasma membrane, vacuole 23.35 66.48
CDY38631 Canola cytosol, peroxisome, vacuole 67.86 66.41
CDY39493 Canola cytosol, peroxisome, plasma membrane 66.47 66.2
CDY19294 Canola cytosol, peroxisome, plasma membrane 67.47 65.76
CDY19295 Canola cytosol, peroxisome, plasma membrane 39.72 65.46
EER93896 Sorghum cytosol, peroxisome, plasma membrane 68.46 65.46
Solyc12g005850.1.1 Tomato plasma membrane 66.27 64.84
Bra023867.1-P Field mustard cytosol, peroxisome, plasma membrane 64.67 64.8
VIT_12s0059g02160.t01 Wine grape plasma membrane 66.47 64.66
KRH25385 Soybean plasma membrane 54.69 62.13
PGSC0003DMT400022543 Potato plasma membrane 62.28 59.54
OQU87609 Sorghum plasma membrane 39.92 48.9
VIT_12s0059g02230.t01 Wine grape cytosol, nucleus, plasma membrane 64.47 46.95
OQU80740 Sorghum cytosol, peroxisome, plasma membrane 46.31 45.31
EES15223 Sorghum plasma membrane 45.91 45.28
OQU85978 Sorghum plasma membrane 36.53 44.1
EER91211 Sorghum plasma membrane 43.31 44.02
OQU79625 Sorghum golgi, plasma membrane, vacuole 44.71 43.84
OQU85979 Sorghum cytosol, peroxisome, vacuole 43.71 43.2
EER96893 Sorghum cytosol, peroxisome, vacuole 41.12 43.19
KXG35815 Sorghum plasma membrane 40.72 42.32
EES15585 Sorghum cytosol, peroxisome, plasma membrane 44.11 42.1
OQU86679 Sorghum cytosol, peroxisome, plasma membrane 42.32 41.98
EER96891 Sorghum cytosol, peroxisome, plasma membrane 40.72 41.98
OQU93093 Sorghum cytosol, peroxisome, plasma membrane 43.91 41.9
KXG25339 Sorghum cytosol, peroxisome, plasma membrane 40.92 41.41
OQU80697 Sorghum cytosol 43.71 41.17
EES09180 Sorghum cytosol, peroxisome, plasma membrane 43.11 40.83
OQU92001 Sorghum peroxisome 39.92 37.88
KXG38740 Sorghum plasma membrane 37.33 36.74
Protein Annotations
MapMan:24.2.4.1.1EntrezGene:8065646UniProt:C5WUC8ncoils:CoilEnsemblPlants:EER91321ProteinID:EER91321
ProteinID:EER91321.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855
GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085
InterPro:MATE_famPFAM:PF01554PANTHER:PTHR11206PANTHER:PTHR11206:SF191EnsemblPlantsGene:SORBI_3001G185800unigene:Sbi.8765
TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI0001A8231FRefSeq:XP_002464323.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:15885792..15892336
Molecular Weight (calculated)
53935.4 Da
IEP (calculated)
7.060
GRAVY (calculated)
0.692
Length
501 amino acids
Sequence
(BLAST)
001: MAGGGDGRQG GTSSSSSHEL SGQLEGILAD REAPWARRAS KAAMIELRLL APIAAPAVVV YVLNNVLSIS TQIFSGHLGN LELAASSLGN NGIQVFAYGL
101: MLGMGSAVET LCGQAYGAHR YEMLGIYLQR STILLVAVGV PLSVIYAFSE PILVFLGESP EIAKAAAVFV YGLIPQVFAY AANFPIQKFL QAQSIVSPSA
201: YISAATLAVH LVLGWLVVYR FGMGLLGASL VLSLSWWIIV AAQFLYIVTS ERCRRTWTGL SCRAFSGLPE FLKLSTASAV MLCLETWYFQ VLVLIAGLLD
301: NPQLALDSLT VCMTLAGWVF MISIGFNAAA SVRVGNELGA GHPRAAAFSV VVVTALSFVI TLAMAVVFLV FRDYLSYIFT EGETVARAVS DLCPLLAATL
401: ILNGIQPVLS GVAVGWQKLV AYINVGCYYF VGIPLGILLG FKFHLGAKGI WTGMLGGTCM QTLILFWITF RTDWDKEVEE ARKRLNQWED NKQPLLLVPS
501: D
Best Arabidopsis Sequence Match ( AT3G21690.1 )
(BLAST)
001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
Arabidopsis Description
DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.