Factsheet for GSMUA_Achr9P11610_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21690.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT3G21690.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT3G21690.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P00360_001	Banana	vacuole	68.28	83.05
EER91321	Sorghum	plasma membrane	76.16	75.25
GSMUA_Achr2P14000_001	Banana	peroxisome, plasma membrane, vacuole	78.99	75.05
Os03t0570800-01	Rice	cytosol, peroxisome, plasma membrane	74.95	74.2
CDY33131	Canola	golgi, plasma membrane, vacuole	25.05	70.45
GSMUA_Achr4P23760_001	Banana	plasma membrane	65.25	70.22
VIT_12s0059g02220.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	71.11	69.43
Solyc07g052380.2.1	Tomato	cytosol, peroxisome, plasma membrane	70.51	69.38
KRH26788	Soybean	plasma membrane	70.51	69.25
VIT_12s0059g02180.t01	Wine grape	cytosol, peroxisome, plasma membrane	70.91	69.23
Bra001840.1-P	Field mustard	plasma membrane	63.64	68.93
PGSC0003DMT400065544	Potato	cytosol, peroxisome, plasma membrane	67.27	68.8
Solyc12g005850.1.1	Tomato	plasma membrane	70.91	68.55
CDY24250	Canola	cytosol, peroxisome, plasma membrane	43.64	68.14
Bra031297.1-P	Field mustard	cytosol, peroxisome, vacuole	68.69	68.14
Bra031296.1-P	Field mustard	cytosol, peroxisome, plasma membrane	69.49	68.12
AT3G21690.1	Thale cress	cytosol, peroxisome, plasma membrane	69.49	67.98
CDY33129	Canola	cytosol, peroxisome, plasma membrane	69.29	67.92
CDY65669	Canola	cytosol, peroxisome, plasma membrane	67.88	67.88
CDX92916	Canola	cytosol, plasma membrane, vacuole	69.09	67.72
CDY33130	Canola	cytosol, peroxisome, vacuole	42.02	67.53
CDY39493	Canola	cytosol, peroxisome, plasma membrane	68.28	67.2
CDY69153	Canola	cytosol, peroxisome, plasma membrane	43.03	67.19
CDY38631	Canola	cytosol, peroxisome, vacuole	69.49	67.19
VIT_12s0059g02160.t01	Wine grape	plasma membrane	69.9	67.18
KRH56125	Soybean	plasma membrane	69.9	66.92
CDY39494	Canola	cytosol, peroxisome, plasma membrane	68.89	66.34
Bra023866.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.25	66.32
CDY19294	Canola	cytosol, peroxisome, plasma membrane	68.48	65.95
Bra023867.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.26	65.6
CDY19295	Canola	cytosol, peroxisome, plasma membrane	39.19	63.82
PGSC0003DMT400022543	Potato	plasma membrane	66.06	62.4
KRH25385	Soybean	plasma membrane	54.95	61.68
VIT_12s0059g02230.t01	Wine grape	cytosol, nucleus, plasma membrane	67.68	48.69
GSMUA_Achr7P11770_001	Banana	plasma membrane	41.82	48.25
GSMUA_Achr7P04510_001	Banana	plasma membrane	37.17	46.23
GSMUA_Achr3P21260_001	Banana	plasma membrane	42.63	45.87
GSMUA_Achr8P03000_001	Banana	plasma membrane	45.86	45.58
GSMUA_Achr4P22990_001	Banana	plasma membrane	46.26	45.53
GSMUA_Achr8P18130_001	Banana	mitochondrion, plasma membrane, vacuole	44.85	45.49
GSMUA_Achr1P15340_001	Banana	plasma membrane	43.43	45.26
GSMUA_Achr7P12820_001	Banana	cytosol	39.19	44.8
GSMUA_Achr9P26370_001	Banana	plasma membrane	42.02	44.64
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	42.83	44.07
GSMUA_Achr2P03560_001	Banana	cytosol, peroxisome, plasma membrane	44.44	44.0
GSMUA_Achr7P21610_001	Banana	plasma membrane	42.63	43.51
GSMUA_Achr5P01870_001	Banana	plasma membrane	41.41	43.43
GSMUA_Achr6P04190_001	Banana	plasma membrane	37.78	43.29
GSMUA_Achr4P05060_001	Banana	peroxisome	44.65	43.16
GSMUA_AchrUn_...	Banana	golgi, peroxisome, vacuole	41.62	40.71

Protein Annotations

MapMan:24.2.4.1.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr9G11610_001	EnsemblPlants:GSMUA_Achr9P11610_001	EnsemblPlants:GSMUA_Achr9T11610_001	UniProt:M0TZH0	InterPro:MATE_fam
PFAM:PF01554	PANTHER:PTHR11206	PANTHER:PTHR11206:SF191	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI000294C225
SEG:seg	:	:	:	:	:

Description

Putative Protein TRANSPARENT TESTA 12 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11610_001]

Coordinates

chr9:+:7547852..7551031

Molecular Weight (calculated)

53650.3 Da

IEP (calculated)

7.434

GRAVY (calculated)

0.701

Length

495 amino acids

Sequence
(BLAST)

001: MAGDHGGEAT HGYSRRLESI LADLTMSWPR RLWSATTVEM QLLFPLAAPA VVVYMLNNLL SLGTQVFSGH LGNLELAASS LGNNGIQIFA YGLMLGMGSA
101: VETLCGQAYG AHKYEMLGIY LQRSTVLLMA TGIPLAVVYA FSRPLLLLLG QSPEIATAAS IFVYGLIPQI FAYAANFPIQ KFLQAQSIVT PSACISAGAL
201: AVHLVLSWVV VYKVGLGLLG ASLVLSLNWW IIVAAQFLYI VTSRRCRFTW TGFSWQAFAG LPEFFKLSTA SAVMLCLETW YYQIMVLIAG LLKDPQLALD
301: SLTVCMSIAG WAFMISVGFN AAASVRVGNE LGAGHPKSAE FSVVVVTVLS LIISLIVATI MLCLRHYISY AFTEGETVAR AVSELSPLLA ATLILNGIQP
401: VLSGVAVGCG WQAFVAYVNV GCYYFVGIPL GILLGFKFDL GAKGIWGGML GGTLMQTFIL IWVTFRTDWN KEVEQAMRRL DKWEDNKQPL LSNLD

Best Arabidopsis Sequence Match ( AT3G21690.1 )
(BLAST)

001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE

Arabidopsis Description

DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.