Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g022910.2.1 | Tomato | plasma membrane, plastid | 97.03 | 78.97 |
| VIT_10s0003g05370.t01 | Wine grape | cytosol | 68.22 | 67.93 |
| PGSC0003DMT400054396 | Potato | cytosol | 63.56 | 63.56 |
| PGSC0003DMT400019648 | Potato | plasma membrane | 54.24 | 51.41 |
Protein Annotations
| EntrezGene:102598435 | MapMan:5.4.10 | InterPro:Fatty_acid_hydroxylase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005506 | GO:GO:0005575 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008610 |
| GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | UniProt:M1ACD1 |
| PFAM:PF04116 | EnsemblPlantsGene:PGSC0003DMG400007595 | PGSC:PGSC0003DMG400007595 | EnsemblPlants:PGSC0003DMT400019647 | PANTHER:PTHR12863 | PANTHER:PTHR12863:SF7 |
| TMHMM:TMhelix | UniParc:UPI00029608F2 | RefSeq:XP_006360310.1 | SEG:seg | : | : |
Description
Sphingolipid fatty acid alpha hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400007595]
Coordinates
chr2:-:13327024..13329146
Molecular Weight (calculated)
27164.4 Da
IEP (calculated)
9.695
GRAVY (calculated)
0.159
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAQGFTVDL NKPLVFQVGH LGDSYEEWVH QPIISKGSPR FFENDILELL TRTVWWAIPS VWLPIVGWLV WTSLKRGGGI SELFLTLLGG IFLWTFLEYS
101: LHRFVFHMKP SGYWANTLHY LIHGCHHKHP MDGLRLVFPP AATAILLLPL WSVVKLLLPF TYAPAFLGGG LLGYIIYDCT HYYLHHGKPF KGISHSLKRY
201: HMDHHFKLQD KGYGITSKFW DIIFGTLPPK PTNKIK
101: LHRFVFHMKP SGYWANTLHY LIHGCHHKHP MDGLRLVFPP AATAILLLPL WSVVKLLLPF TYAPAFLGGG LLGYIIYDCT HYYLHHGKPF KGISHSLKRY
201: HMDHHFKLQD KGYGITSKFW DIIFGTLPPK PTNKIK
001: MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
101: LHRFVFHIKT KSYWGNTAHY LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT HYYLHHAQPT RPVTKNLKKY
201: HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ
Arabidopsis Description
FAH1FAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.