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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 1
  • plastid 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana extracellular, plasma membrane, vacuole 49.48 57.14
GSMUA_Achr11P... Banana extracellular, vacuole 50.0 52.72
Zm00001d017402_P001 Maize cytosol, plasma membrane, plastid 61.86 51.5
EES05823 Sorghum plastid 60.82 50.43
GSMUA_Achr5P19910_001 Banana mitochondrion 47.94 48.95
TraesCS6D01G221100.1 Wheat cytosol, peroxisome, vacuole 54.12 45.45
TraesCS6B01G285700.1 Wheat cytosol, peroxisome, vacuole 53.09 44.59
TraesCS6A01G238800.1 Wheat cytosol 53.09 44.4
Os02t0644200-01 Rice cytosol, peroxisome 28.35 42.97
GSMUA_Achr1P20190_001 Banana plastid 50.52 41.88
EES12569 Sorghum cytosol 54.12 41.34
HORVU6Hr1G061000.1 Barley extracellular 52.58 38.93
EES11692 Sorghum cytosol, peroxisome, vacuole 44.33 37.55
OQU85754 Sorghum plastid 58.76 36.89
OQU82931 Sorghum cytosol, peroxisome, plastid, vacuole 38.66 31.65
Protein Annotations
EnsemblPlants:OQU85755EnsemblPlantsGene:SORBI_3004G301650GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Ccc1_fam
PANTHER:PTHR31851PANTHER:PTHR31851:SF32PFAM:PF01988ProteinID:OQU85755ProteinID:OQU85755.1SEG:seg
TMHMM:TMhelixUniParc:UPI000B8BA1C1UniProt:A0A1Z5RQN7MapMan:24.2.12.3::
Description
hypothetical protein
Coordinates
chr4:+:64038396..64039002
Molecular Weight (calculated)
19734.8 Da
IEP (calculated)
9.803
GRAVY (calculated)
0.238
Length
194 amino acids
Sequence
(BLAST)
001: MNRRVARTSD IDPKTVARAQ WLRAAVLGAN DGLVSVAFLM IGVGAINDGA REMLVSGLAG LVAGACSMAI DEFMSVYAQY DIKCGGSDDS NSSEGVDKGE
101: SLPNPTKAVA ASALAFTVGA ALPLLLGGQG RGGVRGQQPG PGSARRARAW AAPTSSAPGS GLRVLLGGWL AMADTFGILR LFSLAFKTHV VSSA
Best Arabidopsis Sequence Match ( AT3G25190.1 )
(BLAST)
001: MTSNVQLSET NSPRNQKTRP RAEKEEVDYM QRAQWLRAAL LGANDGLVTV ASLMMGVGSI KEDVKAMLLV GFAGLVAGAC SMAIGEFVSV CTQRDIETAQ
101: MKRAIEHKTS LSAIDEQEEE EKKERLPNPG QAAIASALAF SVGAAMPLLG AVFIENHKVR MVVVAVVATI ALVVFGVTGA VLGKTSVVKS SVRVVIGGWM
201: AMALTFGLTK FIGSAAMQI
Arabidopsis Description
Vacuolar iron transporter homolog 2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF6]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.