Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G221100.1 | Wheat | cytosol, peroxisome, vacuole | 92.21 | 92.21 |
| TraesCS6A01G238800.1 | Wheat | cytosol | 90.48 | 90.09 |
| HORVU6Hr1G061000.1 | Barley | extracellular | 93.51 | 82.44 |
| Os02t0644200-01 | Rice | cytosol, peroxisome | 39.83 | 71.88 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 48.92 | 67.26 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 52.81 | 66.3 |
| GSMUA_Achr5P19910_001 | Banana | mitochondrion | 53.25 | 64.74 |
| Zm00001d017402_P001 | Maize | cytosol, plasma membrane, plastid | 64.94 | 64.38 |
| TraesCS2B01G404700.1 | Wheat | cytosol, peroxisome, vacuole | 65.37 | 63.98 |
| EES05823 | Sorghum | plastid | 64.5 | 63.68 |
| GSMUA_Achr1P20190_001 | Banana | plastid | 59.31 | 58.55 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 48.05 | 53.88 |
| OQU85755 | Sorghum | cytosol, mitochondrion, plasma membrane, plastid | 44.59 | 53.09 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 45.45 | 50.0 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 45.45 | 50.0 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 38.96 | 49.45 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 45.02 | 49.06 |
| OQU85754 | Sorghum | plastid | 63.2 | 47.25 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 41.56 | 45.28 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 44.16 | 37.92 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G285700.1 | EnsemblPlantsGene:TraesCS6B01G285700 | InterPro:Ccc1_fam | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF32 | PFAM:PF01988 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.12.3 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:515021911..515022606
Molecular Weight (calculated)
22693.2 Da
IEP (calculated)
6.782
GRAVY (calculated)
0.479
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAADLSSH VHAAADAAPK SPAKPKQEEI SPAAADVDDD VEAGGGSPGG DGVNYVARAQ WLRAAVLGAN DGLVTVASLM IGVGAVNDSK RAMLVSGVAG
101: LVSGACSMAI GEFVSVYAQY DIEVAQIKRI RGGDGDRSNL PSPMLAAGAS ALAFAAGAAL PLLSGGFVRT WAGRVVAVCA ASSVGLAGFG VLGAYLGGAS
201: VVRSGARVLV GGWLAMATTY GALKLFGVHG A
101: LVSGACSMAI GEFVSVYAQY DIEVAQIKRI RGGDGDRSNL PSPMLAAGAS ALAFAAGAAL PLLSGGFVRT WAGRVVAVCA ASSVGLAGFG VLGAYLGGAS
201: VVRSGARVLV GGWLAMATTY GALKLFGVHG A
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.