Factsheet for PGSC0003DMT400032701

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25190.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT3G25190.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076566	Potato	extracellular, plasma membrane, vacuole	70.42	93.17
PGSC0003DMT400076567	Potato	plasma membrane	91.55	92.86
Solyc01g105260.1.1	Tomato	extracellular, vacuole	66.67	89.31
PGSC0003DMT400076565	Potato	plasma membrane	86.85	86.05
PGSC0003DMT400076561	Potato	cytosol, peroxisome, plasma membrane	73.71	72.02
VIT_12s0055g00870.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.08	64.73
KRH42213	Soybean	cytosol, endoplasmic reticulum, plasma membrane	63.85	61.54
VIT_12s0055g00860.t01	Wine grape	cytosol, peroxisome, plasma membrane	64.32	61.44
KRH58338	Soybean	cytosol, peroxisome, plasma membrane	55.4	60.2
PGSC0003DMT400008929	Potato	cytosol, peroxisome, vacuole	63.85	59.91
GSMUA_Achr9P29610_001	Banana	cytosol, peroxisome, vacuole	56.81	59.31
KRH28884	Soybean	cytosol, peroxisome, vacuole	63.38	58.7
KRH42212	Soybean	plasma membrane	63.38	58.7
KRH58337	Soybean	plasma membrane	62.91	58.52
TraesCS2D01G588000.1	Wheat	cytosol, plasma membrane, vacuole	51.64	57.29
VIT_12s0055g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	56.34	56.87
PGSC0003DMT400076498	Potato	plasma membrane	57.75	56.68
KRH76566	Soybean	cytosol, peroxisome, vacuole	61.97	56.65
CDY15107	Canola	cytosol, peroxisome, plasma membrane	58.22	56.62
Bra013226.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.75	56.16
CDY52279	Canola	cytosol, peroxisome, plasma membrane	57.75	56.16
Os04t0686800-01	Rice	cytosol, peroxisome, vacuole	54.46	55.77
AT3G25190.1	Thale cress	cytosol, peroxisome, plastid	56.81	55.25
TraesCS2B01G610400.1	Wheat	cytosol, plasma membrane, vacuole	53.05	54.85
KRH42214	Soybean	extracellular	42.25	54.55
Zm00001d002884_P001	Maize	cytosol, plasma membrane, vacuole	53.52	53.27
TraesCS2A01G434100.1	Wheat	cytosol, plasma membrane, vacuole	30.99	52.8
Zm00001d026679_P001	Maize	cytosol, peroxisome, vacuole	50.7	52.17
KRH42215	Soybean	cytosol, plastid, vacuole	55.87	51.97
KRH58339	Soybean	cytosol, peroxisome, plasma membrane	53.99	51.57
PGSC0003DMT400076558	Potato	cytosol, peroxisome, plasma membrane	49.3	50.97
TraesCS2D01G431900.1	Wheat	cytosol, plasma membrane, vacuole	50.23	50.95
TraesCS2B01G455200.1	Wheat	cytosol, plasma membrane, vacuole	49.77	50.48
TraesCS2B01G455100.1	Wheat	cytosol, plasma membrane, vacuole	49.77	50.48
TraesCS2A01G434000.1	Wheat	cytosol, plasma membrane, vacuole	49.77	50.48
TraesCS2B01G455300.1	Wheat	cytosol, plasma membrane, vacuole	50.23	50.47
TraesCS2A01G434200.1	Wheat	cytosol, plasma membrane, vacuole	49.3	50.0
TraesCS2A01G433900.1	Wheat	cytosol, plasma membrane, vacuole	49.3	50.0
KRH58340	Soybean	plasma membrane	55.4	50.0
TraesCS2D01G432000.1	Wheat	cytosol, plasma membrane, vacuole	49.3	49.53
KRH58336	Soybean	peroxisome, plasma membrane, vacuole	41.78	49.44
EES11692	Sorghum	cytosol, peroxisome, vacuole	52.58	48.91
TraesCS2B01G455000.1	Wheat	cytosol, plasma membrane, vacuole	41.78	48.9
TraesCS2B01G454900.1	Wheat	cytosol, plasma membrane, vacuole	46.48	46.7
GSMUA_Achr10P...	Banana	plasma membrane	56.34	45.8
HORVU2Hr1G101180.2	Barley	cytosol	48.83	45.41
TraesCS4A01G209600.1	Wheat	plasma membrane	42.25	45.23
Os11t0161900-00	Rice	cytosol, nucleus, plasma membrane	41.78	43.0
TraesCS4D01G110600.1	Wheat	cytosol, plasma membrane, vacuole	43.19	41.63
HORVU4Hr1G020210.1	Barley	cytosol, peroxisome	43.19	41.07
OQU82931	Sorghum	cytosol, peroxisome, plastid, vacuole	44.13	39.66
KRH42211	Soybean	cytosol, plasma membrane, vacuole	37.09	37.62
TraesCS4B01G112900.1	Wheat	endoplasmic reticulum	43.19	34.2
PGSC0003DMT400024377	Potato	cytosol, peroxisome, plasma membrane	41.78	32.36
PGSC0003DMT400024376	Potato	cytosol, peroxisome, plasma membrane	41.78	32.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400032701	EnsemblPlantsGene:PGSC0003DMG400012556	EntrezGene:107061413	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ccc1_fam	PANTHER:PTHR31851	PANTHER:PTHR31851:SF30	PFAM:PF01988	PGSC:PGSC0003DMG400012556	RefSeq:XP_015166094.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000296CFDC	UniProt:M1AXV0	MapMan:24.2.12.3	:

Description

Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400012556]

Coordinates

chr1:-:81947033..81947674

Molecular Weight (calculated)

22479.4 Da

IEP (calculated)

6.514

GRAVY (calculated)

0.320

Length

213 amino acids

Sequence
(BLAST)

001: MAAQNHVQVT IPKENHAPEE DFDYSQRAQW LRAAVLGAND GLVSIASLMM GVGAVQENVK TMILTGFAGL FAGACSMAIG EFVSVYSQLD IERAQMKRDK
101: ETGGQNREHQ EDGEGNKEQL PNPFQAAVAS SVAFSLGAIM PILAAAFIAN HKLRLAVIVA AVSLALLAFG GIGAFLGRSP MVKSCARVLI GGWMAMAITF
201: GLTKLIGSTG LEI

Best Arabidopsis Sequence Match ( AT3G43660.1 )
(BLAST)

001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL

Arabidopsis Description

Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [cytosol,peroxisome,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.