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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G44080.1 Bra030034.1-P AT1G27300.1 21798944
AT2G44080.1 Bra032817.1-P AT1G27300.1 21798944
AT2G44080.1 Bra003423.1-P AT3G60600.1 21798944
AT2G44080.1 Bra007547.1-P AT3G60600.1 21798944
AT2G44080.1 Bra014481.1-P AT3G60600.1 21798944
AT2G44080.1 Bra026434.1-P AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30454 Canola cytosol, peroxisome, plastid 100.0 99.25
CDY23416 Canola cytosol, peroxisome, plasma membrane 99.25 98.51
Bra004803.1-P Field mustard plasma membrane 63.91 77.98
Bra000340.1-P Field mustard cytosol, peroxisome, plasma membrane, plastid 78.95 76.64
AT2G44080.1 Thale cress cytosol, peroxisome, plasma membrane 76.69 75.56
Bra003394.1-P Field mustard plastid 55.64 66.07
Bra007491.1-P Field mustard extracellular, golgi, plasma membrane 51.88 65.09
Protein Annotations
EnsemblPlants:Bra037667.1EnsemblPlants:Bra037667.1-PEnsemblPlantsGene:Bra037667GO:GO:0005575GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0040007GO:GO:0046622InterPro:ARGOS/ARLPANTHER:PTHR36023PANTHER:PTHR36023:SF3
SEG:segTMHMM:TMhelixUniParc:UPI0002543E88UniProt:M4F9A4MapMan:35.1:
Description
AT2G44080 (E=5e-028) ARL | ARL (ARGOS-LIKE)
Coordinates
chrA04:+:18259916..18260317
Molecular Weight (calculated)
14861.7 Da
IEP (calculated)
11.065
GRAVY (calculated)
0.217
Length
133 amino acids
Sequence
(BLAST)
001: MIREISGLQN DIVNIQERSS SSNNKIMDMR RDIRRPAQAP MMSKQEYFRT LSSQNSPRRL ISASYFSLES MVVLVGLTAS LLILPLILPP LPPPPFMLLL
101: IPIGIMVLLM VLALMPSSSS SSSNAKHVTR TYM
Best Arabidopsis Sequence Match ( AT2G44080.1 )
(BLAST)
001: MIREFSSLQN DIINIQEHYS LNNNMDVRGD HNRKNTSFRG SAPAPIMGKQ ELFRTLSSQN SPRRLISASY FSLESMVVLV GLTASLLILP LILPPLPPPP
101: FMLLLIPIGI MVLLMVLAFM PSSNSKHVSS SSTFM
Arabidopsis Description
ARLARGOS-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RXL7]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.