Factsheet for Bra004803.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 2
plasma membrane 4
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44080.1	Bra030034.1-P	AT1G27300.1	21798944
AT2G44080.1	Bra032817.1-P	AT1G27300.1	21798944
AT2G44080.1	Bra003423.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra007547.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra014481.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79784	Canola	plasma membrane	99.08	99.08
CDY17888	Canola	plasma membrane	98.17	98.17
Bra007491.1-P	Field mustard	extracellular, golgi, plasma membrane	64.22	66.04
Bra037667.1-P	Field mustard	cytosol, peroxisome, plastid	77.98	63.91
Bra003394.1-P	Field mustard	plastid	64.22	62.5
AT2G44080.1	Thale cress	cytosol, peroxisome, plasma membrane	76.15	61.48
Bra000340.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	77.06	61.31

Protein Annotations

EnsemblPlants:Bra004803.1	EnsemblPlants:Bra004803.1-P	EnsemblPlantsGene:Bra004803	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0040007	GO:GO:0046622	InterPro:ARGOS/ARL	PANTHER:PTHR36023	PANTHER:PTHR36023:SF3
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547C4F	UniProt:M4CKR8	MapMan:35.2	:

Description

AT2G44080 (E=5e-017) ARL | ARL (ARGOS-LIKE)

Coordinates

chrA05:+:1892847..1893176

Molecular Weight (calculated)

12060.2 Da

IEP (calculated)

10.536

GRAVY (calculated)

0.339

Length

109 amino acids

Sequence
(BLAST)

001: MDTTRDNRKD MSFRGSAQAP MMSKQEYIRT SSQGSKPRKL VTASYFSLES VVVLVGLTAS LLILPLILPP LPPPPFMLLL IPIGIMFLLM VLAFMPSSSN
101: AKHVTNTYM

Best Arabidopsis Sequence Match ( AT2G44080.1 )
(BLAST)

001: MIREFSSLQN DIINIQEHYS LNNNMDVRGD HNRKNTSFRG SAPAPIMGKQ ELFRTLSSQN SPRRLISASY FSLESMVVLV GLTASLLILP LILPPLPPPP
101: FMLLLIPIGI MVLLMVLAFM PSSNSKHVSS SSTFM

Arabidopsis Description

ARLARGOS-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RXL7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.