Factsheet for Solyc11g013320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016755	Potato	cytosol	87.53	87.76
VIT_18s0001g04400.t01	Wine grape	plasma membrane	51.69	58.19
KRH64762	Soybean	plasma membrane	53.25	55.71
KRH53148	Soybean	plasma membrane	53.77	55.5
AT1G77860.2	Thale cress	nucleus, peroxisome, plasma membrane	49.09	49.09
Bra015649.1-P	Field mustard	plasma membrane	48.57	48.45
CDX87497	Canola	plasma membrane	48.57	48.45
CDX88394	Canola	plasma membrane	48.05	47.68
Solyc09g010880.2.1	Tomato	extracellular	38.96	39.16
Solyc03g026080.2.1	Tomato	plasma membrane	31.95	38.68
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	32.73	37.84
Solyc06g005580.2.1	Tomato	plasma membrane	34.03	33.85

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	UniProt:K4D6D6	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF39	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.A04	SUPFAM:SSF144091
EnsemblPlantsGene:Solyc11g013320.1	EnsemblPlants:Solyc11g013320.1.1	TMHMM:TMhelix	UniParc:UPI000276A435	SEG:seg	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:K4D6D6]

Coordinates

chr11:+:6297116..6299646

Molecular Weight (calculated)

42931.6 Da

IEP (calculated)

8.598

GRAVY (calculated)

0.298

Length

385 amino acids

Sequence
(BLAST)

001: MADSSKSQSQ VEIKQQCASM ASTFSTEMTA DERVPFPFFR PLSQKRANTW IISLFVILHL GAFTVTMIVN DCWENSYGDC ALKPLRRFSF QPLYENPLLG
101: PSASTLEEIG ALQKTLLTNN QQLRRIFTSP WLHAGLFHLI INLSSVIFVG LHLEQEFGSF RIGVIYILSA ITGSLVASLF VQDRPSVCSS GALVGLLGTL
201: LSGLIRNWKS YTNKFAGLVA TMTILMTNLV LGLIPYINNF ANIGGFMSGF LLGFVLLFKP QQEKLARNKG GLFEFDAKDI VKCRKSLDKP VQRGSALVIF
301: ALLLAGIIMA VLHGIDINKY CSWCHYFDCI PSKWWSCTDK AFHCEKLVSS EHLTLSCPNT GRFKVFPFTN ISEARFQDIC NLICS

Best Arabidopsis Sequence Match ( AT1G77860.2 )
(BLAST)

001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS

Arabidopsis Description

KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.