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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH62024 Soybean nucleus 87.5 95.91
TraesCS3A01G305400.1 Wheat cytosol, peroxisome 71.71 84.5
GSMUA_Achr4P08110_001 Banana cytosol 76.54 82.9
VIT_04s0008g03770.t01 Wine grape cytosol 76.1 82.23
GSMUA_Achr7P25170_001 Banana cytosol, peroxisome, plastid 75.66 81.37
PGSC0003DMT400028106 Potato plastid 80.04 80.57
CDX70399 Canola plastid 78.95 80.0
Solyc08g068330.2.1 Tomato plastid 79.17 79.87
AT5G11520.1 Thale cress plastid 78.29 79.51
Bra006103.1-P Field mustard plastid 78.73 79.42
CDX78428 Canola plastid 78.73 79.42
TraesCS3B01G331100.1 Wheat golgi 78.51 78.85
Os01t0760600-01 Rice plastid 79.39 78.7
KXG33419 Sorghum plastid 77.85 77.34
Zm00001d043382_P001 Maize plasma membrane 77.41 76.91
HORVU3Hr1G073220.8 Barley mitochondrion, plastid 78.73 73.57
CDX91212 Canola plastid 47.59 70.68
KRH05255 Soybean plastid 50.44 49.68
KRH15792 Soybean plastid 50.22 49.46
KRH55720 Soybean mitochondrion 45.39 48.48
KRH76094 Soybean mitochondrion 37.94 40.14
KRH65466 Soybean mitochondrion 27.63 38.77
Protein Annotations
KEGG:00220+2.6.1.1KEGG:00250+2.6.1.1KEGG:00270+2.6.1.1KEGG:00330+2.6.1.1KEGG:00350+2.6.1.1KEGG:00360+2.6.1.1
KEGG:00400+2.6.1.1KEGG:00401+2.6.1.1KEGG:00710+2.6.1.1KEGG:00950+2.6.1.1KEGG:00960+2.6.1.1MapMan:25.1.7
Gene3D:3.40.640.10Gene3D:3.90.1150.10EntrezGene:547509EMBL:ACUP02003427EMBL:AF034210InterPro:Aminotransferase_I/II
InterPro:Asp_transEnsemblPlantsGene:GLYMA_06G082400GO:GO:0003674GO:GO:0003824GO:GO:0004069GO:GO:0005488
GO:GO:0006520GO:GO:0008150GO:GO:0008152GO:GO:0008483GO:GO:0009058GO:GO:0009987
GO:GO:0016740GO:GO:0030170GO:GO:0080130InterPro:IPR015421InterPro:IPR015422EnsemblPlants:KRH52682
ProteinID:KRH52682ProteinID:KRH52682.1InterPro:NHTrfase_class1_PyrdxlP-BSUniProt:O48548PFAM:PF00155PRINTS:PR00799
ScanProsite:PS00105PANTHER:PTHR11879PANTHER:PTHR11879:SF33MetaCyc:PWY-5913MetaCyc:PWY-6318MetaCyc:PWY-6638
MetaCyc:PWY-6642MetaCyc:PWY-6643MetaCyc:PWY-7115MetaCyc:PWY-7117MetaCyc:PWY-7383InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383UniParc:UPI000009EC62SEG:seg:
Description
hypothetical protein
Coordinates
chr6:-:6336628..6341690
Molecular Weight (calculated)
49721.8 Da
IEP (calculated)
8.660
GRAVY (calculated)
-0.034
Length
456 amino acids
Sequence
(BLAST)
001: MRPPVILKTT TSLLDSSSSS PPCDRRLNTL ARHFLPQMAS HDSISASPTS ASDSVFNHLV RAPEDPILGV TVAYNKDPSP VKLNLGVGAY RTEEGKPLVL
101: NVVRRVEQQL INDVSRNKEY IPIVGLADFN KLSAKLIFGA DSPAIQDNRV TTVQCLSGTG SLRVGGEFLA KHYHQRTIYL PTPTWGNHPK VFNLAGLSVK
201: TYRYYAPATR GLDFQGLLED LGSAPSGSIV LLHACAHNPT GVDPTLEQWE QIRQLIRSKA LLPFFDSAYQ GFASGSLDAD AQPVRLFVAD GGELLVAQSY
301: AKNLGLYGER VGALSIVCKS ADVASRVESQ LKLVIRPMYS SPPIHGASIV AAILKDRNLF NDWTIELKAM ADRIISMRQE LFDALCSRGT PGDWSHIIKQ
401: IGMFTFTGLN AEQVSFMTKE FHIYMTSDGR ISMAGLSSKT VPLLADAIHA AVTRVV
Best Arabidopsis Sequence Match ( AT5G11520.1 )
(BLAST)
001: MKTTHFSSSS SSDRRIGALL RHLNSGSDSD NLSSLYASPT SGGTGGSVFS HLVQAPEDPI LGVTVAYNKD PSPVKLNLGV GAYRTEEGKP LVLNVVRKAE
101: QQLINDRTRI KEYLPIVGLV EFNKLSAKLI LGADSPAIRE NRITTVECLS GTGSLRVGGE FLAKHYHQKT IYITQPTWGN HPKIFTLAGL TVKTYRYYDP
201: ATRGLNFQGL LEDLGAAAPG SIVLLHACAH NPTGVDPTIQ QWEQIRKLMR SKGLMPFFDS AYQGFASGSL DTDAKPIRMF VADGGECLVA QSYAKNMGLY
301: GERVGALSIV CKSADVAGRV ESQLKLVIRP MYSSPPIHGA SIVAVILRDK NLFNEWTLEL KAMADRIISM RKQLFEALRT RGTPGDWSHI IKQIGMFTFT
401: GLNPAQVSFM TKEYHIYMTS DGRISMAGLS SKTVPHLADA IHAVVTKAV
Arabidopsis Description
ASP3Aspartate aminotransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46644]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.