CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52682	Soybean	endoplasmic reticulum	95.91	87.5
TraesCS3A01G305400.1	Wheat	cytosol, peroxisome	78.12	83.98
GSMUA_Achr4P08110_001	Banana	cytosol	84.13	83.14
VIT_04s0008g03770.t01	Wine grape	cytosol	82.93	81.75
GSMUA_Achr7P25170_001	Banana	cytosol, peroxisome, plastid	82.69	81.13
PGSC0003DMT400028106	Potato	plastid	84.38	77.48
AT5G11520.1	Thale cress	plastid	82.93	76.84
Solyc08g068330.2.1	Tomato	plastid	83.41	76.77
CDX70399	Canola	plastid	82.93	76.67
Bra006103.1-P	Field mustard	plastid	82.69	76.11
CDX78428	Canola	plastid	82.69	76.11
Os01t0760600-01	Rice	plastid	82.93	75.0
TraesCS3B01G331100.1	Wheat	golgi	81.49	74.67
Zm00001d043382_P001	Maize	plasma membrane	82.21	74.51
KXG33419	Sorghum	plastid	82.21	74.51
HORVU3Hr1G073220.8	Barley	mitochondrion, plastid	81.49	69.47
CDX91212	Canola	plastid	49.52	67.1
KRH05255	Soybean	plastid	55.05	49.46
KRH15792	Soybean	plastid	54.81	49.24
KRH55720	Soybean	mitochondrion	49.28	48.01
KRH76094	Soybean	mitochondrion	41.83	40.37
KRH65466	Soybean	mitochondrion	30.29	38.77

Protein Annotations

KEGG:00220+2.6.1.1	KEGG:00250+2.6.1.1	KEGG:00270+2.6.1.1	KEGG:00330+2.6.1.1	KEGG:00350+2.6.1.1	KEGG:00360+2.6.1.1
KEGG:00400+2.6.1.1	KEGG:00401+2.6.1.1	KEGG:00710+2.6.1.1	KEGG:00950+2.6.1.1	KEGG:00960+2.6.1.1	MapMan:25.1.7
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02002208	InterPro:Aminotransferase_I/II	InterPro:Asp_trans	EnsemblPlantsGene:GLYMA_04G080700
GO:GO:0003674	GO:GO:0003824	GO:GO:0004069	GO:GO:0005488	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170
GO:GO:0080130	UniProt:I1JUS6	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH62024	ProteinID:KRH62024
ProteinID:KRH62024.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00799	ScanProsite:PS00105	PANTHER:PTHR11879
PANTHER:PTHR11879:SF33	MetaCyc:PWY-5913	MetaCyc:PWY-6318	MetaCyc:PWY-6638	MetaCyc:PWY-6642	MetaCyc:PWY-6643
MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7383	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI00023394DB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6781998..6786902

Molecular Weight (calculated)

45311.5 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.011

Length

416 amino acids

Sequence
(BLAST)

001: MASHDGISAA SSDSVFNHLV RAPEDPILGV TVAYNKDPSP VKLNLGVGAY RTEEGKPLVL NVVRRVEQQL INDVSRNKEY IPIVGLADFN KLSAKLIFGA
101: DSPAIQDNRV TTVQCLSGTG SLRVGGEFLA KHYHQRTIYL PTPTWGNHPK VFNLAGLSVK TYRYYAPATR GLDFQGLLED LGSAPSGSIV LLHACAHNPT
201: GVDPTLEQWE QIRLLIRSKA LLPFFDSAYQ GFASGSLDAD AQPVRLFVAD GGELLVAQSY AKNLGLYGER VGALSIVCKS ADVASRVESQ LKLVIRPMYS
301: SPPIHGASIV AAILKDRDLF NDWTIELKAM ADRIINMRQE LFDALRSRGT PGDWSHIIKQ IGMFTFTGLN AEQVSFMTKE YHIYMTSDGR ISMAGLSSKT
401: VPLLADAIHA AVARVA

Best Arabidopsis Sequence Match ( AT5G11520.1 )
(BLAST)

001: MKTTHFSSSS SSDRRIGALL RHLNSGSDSD NLSSLYASPT SGGTGGSVFS HLVQAPEDPI LGVTVAYNKD PSPVKLNLGV GAYRTEEGKP LVLNVVRKAE
101: QQLINDRTRI KEYLPIVGLV EFNKLSAKLI LGADSPAIRE NRITTVECLS GTGSLRVGGE FLAKHYHQKT IYITQPTWGN HPKIFTLAGL TVKTYRYYDP
201: ATRGLNFQGL LEDLGAAAPG SIVLLHACAH NPTGVDPTIQ QWEQIRKLMR SKGLMPFFDS AYQGFASGSL DTDAKPIRMF VADGGECLVA QSYAKNMGLY
301: GERVGALSIV CKSADVAGRV ESQLKLVIRP MYSSPPIHGA SIVAVILRDK NLFNEWTLEL KAMADRIISM RKQLFEALRT RGTPGDWSHI IKQIGMFTFT
401: GLNPAQVSFM TKEYHIYMTS DGRISMAGLS SKTVPHLADA IHAVVTKAV

Arabidopsis Description

ASP3Aspartate aminotransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46644]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.