CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g01820.t01	Wine grape	mitochondrion	81.26	82.03
TraesCS7D01G369300.1	Wheat	mitochondrion	79.86	80.05
TraesCS7B01G274100.1	Wheat	mitochondrion	79.16	79.34
TraesCS7A01G353500.1	Wheat	mitochondrion	79.16	79.34
PGSC0003DMT400052597	Potato	mitochondrion	78.69	79.06
Solyc07g055210.2.1	Tomato	extracellular, mitochondrion, plastid	78.69	79.06
GSMUA_Achr6P14650_001	Banana	mitochondrion	79.16	78.79
Bra021682.1-P	Field mustard	mitochondrion	77.99	78.17
TraesCS6A01G018600.1	Wheat	golgi, mitochondrion	77.75	77.93
CDY58981	Canola	mitochondrion	77.75	77.75
TraesCS6B01G026900.1	Wheat	mitochondrion	77.52	77.7
KXG29888	Sorghum	mitochondrion	78.22	77.67
Zm00001d016198_P003	Maize	mitochondrion	78.22	77.67
CDX97776	Canola	mitochondrion	77.99	77.62
Os02t0236000-01	Rice	mitochondrion	78.45	77.55
TraesCS6D01G022800.1	Wheat	mitochondrion	78.22	77.49
AT2G30970.1	Thale cress	mitochondrion	77.28	76.74
CDY10765	Canola	mitochondrion	75.41	75.94
Bra018286.1-P	Field mustard	mitochondrion	75.18	75.71
CDY52691	Canola	mitochondrion	70.73	74.38
Os06t0548000-01	Rice	mitochondrion	80.33	74.08
HORVU6Hr1G003470.2	Barley	plastid	76.58	68.41
HORVU7Hr1G089290.4	Barley	cytosol	79.39	64.2
HORVU2Hr1G033320.4	Barley	cytosol	9.37	54.79
KRH76094	Soybean	mitochondrion	54.8	54.29
KRH65466	Soybean	mitochondrion	38.88	51.08
KRH62024	Soybean	nucleus	48.01	49.28
KRH52682	Soybean	endoplasmic reticulum	48.48	45.39
KRH15792	Soybean	plastid	45.9	42.33
KRH05255	Soybean	plastid	45.9	42.33

Protein Annotations

KEGG:00220+2.6.1.1	KEGG:00250+2.6.1.1	KEGG:00270+2.6.1.1	KEGG:00330+2.6.1.1	KEGG:00350+2.6.1.1	KEGG:00360+2.6.1.1
KEGG:00400+2.6.1.1	KEGG:00401+2.6.1.1	KEGG:00710+2.6.1.1	KEGG:00950+2.6.1.1	KEGG:00960+2.6.1.1	MapMan:25.1.7
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:547813	UniProt:A0A0R0JTF7	EMBL:ACUP02004050	InterPro:Aminotransferase_I/II
InterPro:Asp_trans	EnsemblPlantsGene:GLYMA_06G275700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004069	GO:GO:0005488
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0030170	GO:GO:0080130	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH55720
ProteinID:KRH55720	ProteinID:KRH55720.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00799	ScanProsite:PS00105
PANTHER:PTHR11879	PANTHER:PTHR11879:SF18	MetaCyc:PWY-5913	MetaCyc:PWY-6318	MetaCyc:PWY-6638	MetaCyc:PWY-6642
MetaCyc:PWY-6643	MetaCyc:PWY-7115	MetaCyc:PWY-7117	MetaCyc:PWY-7383	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00019D3467	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:46668418..46675552

Molecular Weight (calculated)

47509.0 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.283

Length

427 amino acids

Sequence
(BLAST)

001: MAIRNSLTGQ FLRRSSVAGA RLMSSSSSWF RSIEPAPKDP ILGVTEAFLA DQSPNKVNVG VGAYRDDHGK PVVLECVREA ERRVAGSQFM EYLPMGGSIK
101: MIEESLKLAF GDNSEFIKDK RIAAVQALSG TGACRLFAAF QQRFHPNTQI YIPVPTWANH HNIWRDAGVP MKTFRYYHPE SRGLDFSGLM DDIKNAPDGS
201: FFLLHACAHN PTGVDPSEEQ WREISSQIKA KGHFPFFDMA YQGFASGDPE RDAKAIKIFL EDGHLIGLAQ SYAKNMGLYG QRAGSLSVLC EDEKQAVAVK
301: SQLQLIARPM YSNPPLHGAL IVSTVLGDPD LKKLWLKEVK VMADRIIGMR TTLRENLEKK GSTLPWQHIT NQIGMFCYSG LTPEQVDRMT NEFHIYMTRN
401: GRISMAGLNT GNVGYVADAI HEVTKSF

Best Arabidopsis Sequence Match ( AT2G30970.2 )
(BLAST)

001: MALAMMIRNA ASKRGMTPIS GHFGGLRSMS SWWKSVEPAP KDPILGVTEA FLADPSPEKV NVGVGAYRDD NGKPVVLECV REAEKRLAGS TFMEYLPMGG
101: SAKMVDLTLK LAYGDNSEFI KDKRIAAVQT LSGTGACRLF ADFQKRFSPG SQIYIPVPTW SNHHNIWKDA QVPQKTYHYY HPETKGLDFS ALMDDVKNAP
201: EGSFFLLHAC AHNPTGVDPT EEQWREISQL FKAKKHFAFF DMAYQGFASG DPARDAKSIR IFLEDGHHIG ISQSYAKNMG LYGQRVGCLS VLCEDPKQAV
301: AVKSQLQQLA RPMYSNPPLH GAQLVSTILE DPELKSLWLK EVKVMADRII GMRTTLRESL EKLGSPLSWE HVTKQIGMFC YSGLTPEQVD RLTSEYHIYM
401: TRNGRISMAG VTTGNVGYLA NAIHEVTKSS

Arabidopsis Description

ASP1Aspartate aminotransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46643]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.