CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006231_P001	Maize	cytosol, mitochondrion	83.48	88.71
TraesCS5D01G333500.1	Wheat	cytosol	79.35	80.06
TraesCS5A01G327600.1	Wheat	cytosol	78.76	78.99
TraesCS5B01G327500.1	Wheat	cytosol	78.47	78.7
TraesCS5A01G328000.1	Wheat	cytosol	71.68	75.23
TraesCS5B01G328000.1	Wheat	plastid	71.09	74.61
TraesCS5D01G333900.1	Wheat	plastid	69.91	73.37
HORVU5Hr1G083100.1	Barley	plastid	69.91	73.37
Bra010731.1-P	Field mustard	cytosol	66.96	71.38
CDX90289	Canola	cytosol	66.96	71.38
KRH51412	Soybean	cytosol	66.67	71.29
CDY12097	Canola	plasma membrane	66.37	70.75
AT4G38690.1	Thale cress	cytosol	65.49	69.81
KRH24254	Soybean	cytosol	63.72	68.14
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	63.13	67.3
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	62.54	66.67
HORVU5Hr1G045890.1	Barley	plastid	64.6	65.96
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	61.65	65.72
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	62.24	65.33
Solyc01g111260.2.1	Tomato	nucleus	61.06	65.09
KRH29259	Soybean	plasma membrane	48.38	64.82
PGSC0003DMT400059705	Potato	cytosol	60.77	64.78
Solyc10g055240.1.1	Tomato	cytosol	59.0	62.89
AT4G34920.1	Thale cress	cytosol	57.82	61.64
CDY17493	Canola	peroxisome	56.64	60.38
CDY58810	Canola	peroxisome	56.64	60.19
Bra034663.1-P	Field mustard	cytosol	55.46	59.12
PGSC0003DMT400059701	Potato	cytosol	31.27	50.72
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	54.87	47.94
CDY58809	Canola	peroxisome	54.57	47.68
AT4G34930.1	Thale cress	plastid	54.57	47.31
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	54.87	43.16
Bra034664.1-P	Field mustard	cytosol	46.61	42.47
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	54.87	41.8
HORVU5Hr1G082990.1	Barley	plastid	34.22	30.45

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	EntrezGene:8070905	UniProt:C5X6U2	EnsemblPlants:EER99259	ProteinID:EER99259
ProteinID:EER99259.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946	PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl
InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	EnsemblPlantsGene:SORBI_3002G277900	SUPFAM:SSF51695
unigene:Sbi.5244	UniParc:UPI0001A83D82	RefSeq:XP_002462738.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:66010206..66014031

Molecular Weight (calculated)

37872.1 Da

IEP (calculated)

7.571

GRAVY (calculated)

-0.337

Length

339 amino acids

Sequence
(BLAST)

001: MAASNSSSAG KNNGTNNPLD AMGAFFSKQV DRRKLVTTEK RALATRLSSS GETFPGSEHR PADRKRWMAE LGADKLRVHQ VVWPGTHDSA TNKIGVPFVT
101: RPFAQCQSMS VYEQLATGTR VVDVRVQEER RVCHGILATY PVDVVLDDVN RFLGETESEV IILEIRTEFG HEDPPEFGKF LVEKLGEHLI PQDEAVFHKT
201: VAELLPRRVI CVWKPRKSPA PKAGDPLWSA GYLRDNWIDT DLPETKFESN LKFLAQQPAV ADRRFFYRVE NTVTPKADNP VLCVWPVTKR IHGYARLFIA
301: EVFAKGLGDK LQVFSTDFID GDFVDACAGV TKARVEGTA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.