Factsheet for Solyc01g111250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
peroxisome 2
plasma membrane 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G34920.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	91.19	89.78
Solyc01g111260.2.1	Tomato	nucleus	88.68	88.68
Solyc10g055240.1.1	Tomato	cytosol	79.56	79.56
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	76.1	76.1
KRH51412	Soybean	cytosol	74.84	75.08
KRH24254	Soybean	cytosol	74.84	75.08
AT4G38690.1	Thale cress	cytosol	74.53	74.53
Bra010731.1-P	Field mustard	cytosol	73.58	73.58
CDX90289	Canola	cytosol	73.58	73.58
CDY12097	Canola	plasma membrane	73.27	73.27
KRH29259	Soybean	plasma membrane	55.97	70.36
AT4G34920.1	Thale cress	cytosol	69.5	69.5
Bra034663.1-P	Field mustard	cytosol	67.61	67.61
CDY58810	Canola	peroxisome	67.61	67.4
CDY17493	Canola	peroxisome	67.3	67.3
EER99259	Sorghum	cytosol	67.3	63.13
Zm00001d006231_P001	Maize	cytosol, mitochondrion	61.95	61.76
TraesCS5D01G333500.1	Wheat	cytosol	64.47	61.01
TraesCS5A01G327600.1	Wheat	cytosol	64.47	60.65
TraesCS5B01G327500.1	Wheat	cytosol	63.84	60.06
TraesCS5A01G328000.1	Wheat	cytosol	59.75	58.82
HORVU5Hr1G083100.1	Barley	plastid	59.43	58.51
TraesCS5B01G328000.1	Wheat	plastid	59.43	58.51
TraesCS5D01G333900.1	Wheat	plastid	59.12	58.2
HORVU5Hr1G045890.1	Barley	plastid	55.66	53.31
AT4G34930.1	Thale cress	plastid	64.78	52.69
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	62.26	51.03
CDY58809	Canola	peroxisome	61.95	50.77
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	61.95	45.71
Bra034664.1-P	Field mustard	cytosol	53.14	45.43
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	62.26	44.49
HORVU5Hr1G082990.1	Barley	plastid	26.73	22.31

Protein Annotations

EnsemblPlants:Solyc01g111250.2.1	EnsemblPlantsGene:Solyc01g111250.2	Gene3D:3.20.20.190	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946
InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	PFAM:PF00388	PFscan:PS50007
SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI0002767548	UniProt:K4B3Y7	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:97564438..97565803

Molecular Weight (calculated)

36769.7 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.521

Length

318 amino acids

Sequence
(BLAST)

001: MGSFFSKQVE RRKSIHTQKK LLYDLKEKTS SNFPGSDYRS DDRKNWMSTL ALEKLQVNQI IWPGTHDSAT NKIGIPFISR PFARTQSMSI YNQLVTGTRV
101: LDIRVQEDSR VCHGILVSYH VDVVINDVKK FLSETQSEII ILEIRTEFGH DDPPEFDTYL ENQLGEFLIH QDNSVFNKTV AELLPKRVIC VWKPRKSAQP
201: KHGSPLWSAG YLKDNWIDTD LPETKFESNM KHLSEQQPVT SRKYFYRVEN TVTPQADNPV LCVKPVTNRI RPYARLFINE SISRGYSDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGKL

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.