CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010731.1-P	Field mustard	cytosol	100.0	100.0
CDY12097	Canola	plasma membrane	99.06	99.06
AT4G38690.1	Thale cress	cytosol	94.03	94.03
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	78.62	78.62
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	75.79	75.79
KRH51412	Soybean	cytosol	75.16	75.39
Solyc01g111260.2.1	Tomato	nucleus	75.16	75.16
KRH24254	Soybean	cytosol	74.53	74.76
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	73.58	73.58
PGSC0003DMT400059705	Potato	cytosol	72.64	72.64
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	72.96	71.83
Solyc10g055240.1.1	Tomato	cytosol	71.7	71.7
KRH29259	Soybean	plasma membrane	54.72	68.77
CDY58810	Canola	peroxisome	67.92	67.71
Zm00001d006231_P001	Maize	cytosol, mitochondrion	67.61	67.4
CDY17493	Canola	peroxisome	67.3	67.3
EER99259	Sorghum	cytosol	71.38	66.96
TraesCS5D01G333500.1	Wheat	cytosol	68.87	65.18
TraesCS5B01G327500.1	Wheat	cytosol	68.87	64.79
TraesCS5A01G327600.1	Wheat	cytosol	68.55	64.5
TraesCS5A01G328000.1	Wheat	cytosol	63.21	62.23
TraesCS5B01G328000.1	Wheat	plastid	63.21	62.23
TraesCS5D01G333900.1	Wheat	plastid	62.26	61.3
HORVU5Hr1G083100.1	Barley	plastid	61.64	60.68
PGSC0003DMT400059701	Potato	cytosol	37.42	56.94
HORVU5Hr1G045890.1	Barley	plastid	57.55	55.12
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	61.01	50.0
CDY58809	Canola	peroxisome	60.69	49.74
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	61.01	45.01
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	61.01	43.6
HORVU5Hr1G082990.1	Barley	plastid	29.25	24.41

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.2	GO:A0A078DP57	EnsemblPlants:CDX90289	ProteinID:CDX90289	ProteinID:CDX90289.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00150863001	InterPro:IPR000909	InterPro:IPR017946	PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl
InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695
UniParc:UPI0002546B51	:	:	:	:	:

Description

BnaA08g16950D

Coordinates

chrLK031862:-:1081951..1084353

Molecular Weight (calculated)

36080.3 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.388

Length

318 amino acids

Sequence
(BLAST)

001: MGTHLSKQLE RRKAISTEKK ALADLQQSCG CEFPGCDYTP SDRKTWMAGV GPDKLHINKI VWPGTHDSAT NKIGIRFVSR PFAQCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLTDLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGDHLIH QDDGVFGKTV AELLPKRVIC VWKPRKSPQP
201: KRGDPLWSAG YLKDNWIDTD LPSTKFESNL KHLSQQQPAA SRKFFYRVEN TVTPQPDNPI LCVKPVTNRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDK
301: DFVDACVGLT FARAEGKA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.