Factsheet for PGSC0003DMT400059705

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G34920.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g055240.1.1	Tomato	cytosol	93.4	93.4
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	80.5	80.5
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	80.82	79.57
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	76.1	76.1
PGSC0003DMT400059701	Potato	cytosol	49.37	75.12
KRH24254	Soybean	cytosol	73.58	73.82
KRH51412	Soybean	cytosol	73.27	73.5
AT4G38690.1	Thale cress	cytosol	72.96	72.96
Bra010731.1-P	Field mustard	cytosol	72.64	72.64
CDX90289	Canola	cytosol	72.64	72.64
CDY12097	Canola	plasma membrane	72.01	72.01
KRH29259	Soybean	plasma membrane	54.09	67.98
AT4G34920.1	Thale cress	cytosol	67.61	67.61
CDY58810	Canola	peroxisome	66.67	66.46
CDY17493	Canola	peroxisome	66.35	66.35
Bra034663.1-P	Field mustard	cytosol	66.35	66.35
Zm00001d006231_P001	Maize	cytosol, mitochondrion	61.32	61.13
EER99259	Sorghum	cytosol	64.78	60.77
TraesCS5A01G328000.1	Wheat	cytosol	61.32	60.37
TraesCS5D01G333500.1	Wheat	cytosol	63.52	60.12
TraesCS5B01G328000.1	Wheat	plastid	60.69	59.75
TraesCS5B01G327500.1	Wheat	cytosol	63.21	59.47
TraesCS5A01G327600.1	Wheat	cytosol	63.21	59.47
TraesCS5D01G333900.1	Wheat	plastid	60.06	59.13
HORVU5Hr1G083100.1	Barley	plastid	59.75	58.82
HORVU5Hr1G045890.1	Barley	plastid	55.97	53.61
AT4G34930.1	Thale cress	plastid	64.15	52.17
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	63.52	52.06
CDY58809	Canola	peroxisome	63.21	51.8
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	63.52	46.87
Bra034664.1-P	Field mustard	cytosol	54.72	46.77
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	63.52	45.39
HORVU5Hr1G082990.1	Barley	plastid	27.99	23.36

Protein Annotations

EntrezGene:102596208	Gene3D:3.20.20.190	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946
UniProt:M1C4M2	PFAM:PF00388	EnsemblPlantsGene:PGSC0003DMG400023211	PGSC:PGSC0003DMG400023211	EnsemblPlants:PGSC0003DMT400059705	InterPro:PLC-like_Pdiesterase_TIM-brl
InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695
UniParc:UPI0002962042	RefSeq:XP_006366611.1	:	:	:	:

Description

Phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400023211]

Coordinates

chr10:+:46704369..46705890

Molecular Weight (calculated)

36823.0 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.431

Length

318 amino acids

Sequence
(BLAST)

001: MGAEVSKQVE RRKAIDTQKK SLCDLKEKNG CNFPGYDYHV QDRKNWMSTL APEKLHVNQI VWPGTHDSAT DEIGIPFISR PFAQCQSLSI YQQLVTGVRV
101: LDIRVQEDRR VCHGILLCYH VDVVINDVKK FLSETHSEII ILEIRTEFGH DDPPDFDKYL EAELGEFLIH QDDNVFNKTI AELLPKRIIC IWKPGKSPQP
201: RQGSPLWSSC YLKDNWIDTD LPEKKFESNM KYLSEQPPIT SRKFFYRVEN TVTPQADNPV LWVKPVTERI HPYARLFIME CISRGYGDRI QIFSSDFIDE
301: DFVDACIGLT NARIEGKL

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.