CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	KRH52586	AT1G22920.1	21798944
AT4G34920.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29259	Soybean	plasma membrane	68.45	85.77
KRH51412	Soybean	cytosol	79.81	79.81
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	78.55	78.3
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	75.08	74.84
Bra010731.1-P	Field mustard	cytosol	74.76	74.53
CDX90289	Canola	cytosol	74.76	74.53
AT4G38690.1	Thale cress	cytosol	74.45	74.21
CDY12097	Canola	plasma membrane	74.45	74.21
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	74.45	74.21
Solyc01g111260.2.1	Tomato	nucleus	73.82	73.58
PGSC0003DMT400059705	Potato	cytosol	73.82	73.58
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	74.76	73.37
Solyc10g055240.1.1	Tomato	cytosol	72.24	72.01
AT4G34920.1	Thale cress	cytosol	66.25	66.04
CDY17493	Canola	peroxisome	64.67	64.47
CDY58810	Canola	peroxisome	64.35	63.95
EER99259	Sorghum	cytosol	68.14	63.72
Zm00001d006231_P001	Maize	cytosol, mitochondrion	64.04	63.64
Bra034663.1-P	Field mustard	cytosol	63.72	63.52
TraesCS5A01G327600.1	Wheat	cytosol	65.62	61.54
TraesCS5D01G333500.1	Wheat	cytosol	64.98	61.31
TraesCS5A01G328000.1	Wheat	cytosol	62.15	60.99
TraesCS5B01G328000.1	Wheat	plastid	62.15	60.99
TraesCS5D01G333900.1	Wheat	plastid	61.83	60.68
TraesCS5B01G327500.1	Wheat	cytosol	64.35	60.35
HORVU5Hr1G083100.1	Barley	plastid	61.2	60.06
PGSC0003DMT400059701	Potato	cytosol	38.49	58.37
HORVU5Hr1G045890.1	Barley	plastid	56.78	54.22
AT4G34930.1	Thale cress	plastid	61.51	49.87
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	58.04	47.42
CDY58809	Canola	peroxisome	57.73	47.16
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	57.73	42.46
Bra034664.1-P	Field mustard	cytosol	48.9	41.67
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	58.04	41.35
HORVU5Hr1G082990.1	Barley	plastid	29.02	24.15

Protein Annotations

EntrezGene:100789013	Gene3D:3.20.20.190	MapMan:35.2	EMBL:ACUP02007173	EnsemblPlantsGene:GLYMA_12G030600	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
UniProt:I1LPN5	InterPro:IPR000909	InterPro:IPR017946	EnsemblPlants:KRH24254	ProteinID:KRH24254	ProteinID:KRH24254.1
PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35
SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI000233C750	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:2274552..2276494

Molecular Weight (calculated)

36312.3 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.474

Length

317 amino acids

Sequence
(BLAST)

001: MGSEVSKQVE RRKAIHTEGK TLSDLRNSGE DYPGSDYHPS DRKKWMSELN PEKVVIKQIV WPGTHDSATN KIGIPCITRP FAQCQSLSIY QQLVLGTRVI
101: DIRVQEDRKV CHGVLVTYSI DVVIKDLKKF LSETQSEIII LEVRTEFGHE DPQEFDKYLE EQLGDYLVPQ DDKVFEKTIA EVLPKRVICV WKPRKSPQPK
201: AGSPLWSAGY LRDNWINTDL PSTKFESNMK HLSEQQPVTS RKYFYRVENT VTPVADNPVL CVKPVTERIH GFARLFISQC FSKGYADRLQ IFSTDFIDQD
301: FVDACVGLTR ARVEGRA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.