Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 2
- plasma membrane 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111260.2.1 | Tomato | nucleus | 95.6 | 95.6 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 87.42 | 86.07 |
| PGSC0003DMT400059705 | Potato | cytosol | 80.5 | 80.5 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 77.67 | 77.67 |
| AT4G38690.1 | Thale cress | cytosol | 76.1 | 76.1 |
| Bra010731.1-P | Field mustard | cytosol | 75.79 | 75.79 |
| CDX90289 | Canola | cytosol | 75.79 | 75.79 |
| CDY12097 | Canola | plasma membrane | 75.47 | 75.47 |
| KRH51412 | Soybean | cytosol | 74.21 | 74.45 |
| KRH24254 | Soybean | cytosol | 74.21 | 74.45 |
| AT4G34920.1 | Thale cress | cytosol | 70.44 | 70.44 |
| KRH29259 | Soybean | plasma membrane | 55.66 | 69.96 |
| CDY17493 | Canola | peroxisome | 69.5 | 69.5 |
| CDY58810 | Canola | peroxisome | 69.18 | 68.97 |
| Bra034663.1-P | Field mustard | cytosol | 67.92 | 67.92 |
| PGSC0003DMT400059701 | Potato | cytosol | 41.2 | 62.68 |
| EER99259 | Sorghum | cytosol | 65.72 | 61.65 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 61.32 | 61.13 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 64.47 | 61.01 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 64.78 | 60.95 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 64.15 | 60.35 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 59.43 | 58.51 |
| HORVU5Hr1G083100.1 | Barley | plastid | 59.43 | 58.51 |
| TraesCS5B01G328000.1 | Wheat | plastid | 59.43 | 58.51 |
| TraesCS5D01G333900.1 | Wheat | plastid | 59.12 | 58.2 |
| HORVU5Hr1G045890.1 | Barley | plastid | 55.66 | 53.31 |
| AT4G34930.1 | Thale cress | plastid | 65.41 | 53.2 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 62.58 | 51.29 |
| CDY58809 | Canola | peroxisome | 62.26 | 51.03 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 62.58 | 46.17 |
| Bra034664.1-P | Field mustard | cytosol | 53.77 | 45.97 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 62.58 | 44.72 |
| HORVU5Hr1G082990.1 | Barley | plastid | 28.3 | 23.62 |
Protein Annotations
| EntrezGene:102589273 | Gene3D:3.20.20.190 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| UniProt:M0ZMW3 | PFAM:PF00388 | EnsemblPlantsGene:PGSC0003DMG400001621 | PGSC:PGSC0003DMG400001621 | EnsemblPlants:PGSC0003DMT400004106 | InterPro:PLC-like_Pdiesterase_TIM-brl |
| InterPro:PLipase_C_PInositol-sp_X_dom | PFscan:PS50007 | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | SMART:SM00148 | SUPFAM:SSF51695 |
| UniParc:UPI000296CEA9 | RefSeq:XP_006359667.1 | RefSeq:XP_015170007.1 | : | : | : |
Description
Phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400001621]
Coordinates
chr1:+:87264139..87265609
Molecular Weight (calculated)
36604.9 Da
IEP (calculated)
7.962
GRAVY (calculated)
-0.489
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFLSKQME RRKAISTQKK LLCDLKEKDS TDFPGCDHCP EDRKNWMSTL ALDKLHVNKM VWPGTHDSAT NKIGIPFISR PFARTQSLSI YNQLVMGTRV
101: LDIRVQKDGR VCHGILVSYN VDAVISDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL ENQLGEFLIH QDDSVFNKTV AEILPKRVIC VWKPRKSPQP
201: KHGSPLWNAG YLKDNWIDTD LPETKFESNM KHLSEQQPVT SRKYFYRVEN TVTPQADNPV LCVKPVTNRI RPHARLFIKE CICRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGKL
101: LDIRVQKDGR VCHGILVSYN VDAVISDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL ENQLGEFLIH QDDSVFNKTV AEILPKRVIC VWKPRKSPQP
201: KHGSPLWNAG YLKDNWIDTD LPETKFESNM KHLSEQQPVT SRKYFYRVEN TVTPQADNPV LCVKPVTNRI RPHARLFIKE CICRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGKL
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.