Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G328000.1 | Wheat | plastid | 96.9 | 96.9 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 96.59 | 96.59 |
| HORVU5Hr1G083100.1 | Barley | plastid | 96.28 | 96.28 |
| HORVU5Hr1G045890.1 | Barley | plastid | 90.09 | 87.65 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 75.23 | 76.18 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 75.23 | 72.32 |
| EER99259 | Sorghum | cytosol | 73.37 | 69.91 |
| KRH51412 | Soybean | cytosol | 62.54 | 63.72 |
| CDX90289 | Canola | cytosol | 61.3 | 62.26 |
| Bra010731.1-P | Field mustard | cytosol | 61.3 | 62.26 |
| KRH24254 | Soybean | cytosol | 60.68 | 61.83 |
| CDY12097 | Canola | plasma membrane | 60.68 | 61.64 |
| KRH29259 | Soybean | plasma membrane | 47.37 | 60.47 |
| AT4G38690.1 | Thale cress | cytosol | 59.44 | 60.38 |
| PGSC0003DMT400059705 | Potato | cytosol | 59.13 | 60.06 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 58.51 | 59.43 |
| Solyc01g111260.2.1 | Tomato | nucleus | 58.51 | 59.43 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 58.2 | 59.12 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 58.2 | 59.12 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 58.2 | 58.2 |
| Solyc10g055240.1.1 | Tomato | cytosol | 56.35 | 57.23 |
| AT4G34920.1 | Thale cress | cytosol | 56.04 | 56.92 |
| CDY17493 | Canola | peroxisome | 55.42 | 56.29 |
| CDY58810 | Canola | peroxisome | 55.42 | 56.11 |
| Bra034663.1-P | Field mustard | cytosol | 54.8 | 55.66 |
| PGSC0003DMT400059701 | Potato | cytosol | 32.51 | 50.24 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 53.87 | 44.85 |
| AT4G34930.1 | Thale cress | plastid | 54.18 | 44.76 |
| CDY58809 | Canola | peroxisome | 53.56 | 44.59 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 54.18 | 40.6 |
| Bra034664.1-P | Field mustard | cytosol | 46.75 | 40.59 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 53.87 | 39.1 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G333900.1 | EnsemblPlantsGene:TraesCS5D01G333900 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | PFAM:PF00388 | PFscan:PS50007 |
| SEG:seg | SMART:SM00148 | SUPFAM:SSF51695 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5D:+:423756764..423757735
Molecular Weight (calculated)
35916.8 Da
IEP (calculated)
8.492
GRAVY (calculated)
-0.263
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIGAFFSG QVNRVKDVAS QQQALSRRQS ASGQDFPGSG HRPADRRTWM AELGPERLRV HQVVWPGTHN SATAEIGVPF VTRPFAQCQS LSVYDQLATG
101: CRLLDVRVQK DRRVCHGPLV ASYTVDVVID DVRRFLSETA AEVLVLEVRT EFGHEDPPEF AKYLVERLGE HLIPQDDAVF RKTIAELLPR RVICVWKPRN
201: SPAPARGGPL WSAGYLRDNW INTDLPEKKF DGNLASLAQQ PDPAAAWRHL YRVENTLTPQ TDNPVLLVEP VTRRIHRFAR FFIAQAFARG LGGKLQVLST
301: DFIDGDFVDA CAGVTKARVD GAA
101: CRLLDVRVQK DRRVCHGPLV ASYTVDVVID DVRRFLSETA AEVLVLEVRT EFGHEDPPEF AKYLVERLGE HLIPQDDAVF RKTIAELLPR RVICVWKPRN
201: SPAPARGGPL WSAGYLRDNW INTDLPEKKF DGNLASLAQQ PDPAAAWRHL YRVENTLTPQ TDNPVLLVEP VTRRIHRFAR FFIAQAFARG LGGKLQVLST
301: DFIDGDFVDA CAGVTKARVD GAA
001: MLSFFSNQID RQKDVSNEEK TLTNLEKSDG SQFPGDDYRP SDRKNWMAGL TLEKLTLNKI VWPGTHDSAT NDIGIPLISR PLAECQSLSI YEQLVLGTRV
101: LDIRVQEDRQ ICHGILTSYE IDVVIDDVIR FLSETHSEIV ILEIRTEFGH KDPPGFETYL ADKLGQFLIH QDDSLFNKPV SEILPKRVIC IWKPRESPKP
201: SRGGILWNSD YLKDNWIDTD LPWTKFQSNL KHLSEQQPTS SRKFFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVSKGCGDKL QILSTDFIEG
301: DFVDACVGLT HARIEGKV
101: LDIRVQEDRQ ICHGILTSYE IDVVIDDVIR FLSETHSEIV ILEIRTEFGH KDPPGFETYL ADKLGQFLIH QDDSLFNKPV SEILPKRVIC IWKPRESPKP
201: SRGGILWNSD YLKDNWIDTD LPWTKFQSNL KHLSEQQPTS SRKFFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVSKGCGDKL QILSTDFIEG
301: DFVDACVGLT HARIEGKV
Arabidopsis Description
AT4g34920/F11I11_160 [Source:UniProtKB/TrEMBL;Acc:Q9SW43]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.