Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G333900.1 | Wheat | plastid | 96.9 | 96.9 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 96.59 | 96.59 |
| HORVU5Hr1G083100.1 | Barley | plastid | 96.28 | 96.28 |
| HORVU5Hr1G045890.1 | Barley | plastid | 90.4 | 87.95 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 76.78 | 77.74 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 76.78 | 73.37 |
| EER99259 | Sorghum | cytosol | 74.61 | 71.09 |
| KRH51412 | Soybean | cytosol | 62.54 | 63.72 |
| CDX90289 | Canola | cytosol | 62.23 | 63.21 |
| Bra010731.1-P | Field mustard | cytosol | 62.23 | 63.21 |
| CDY12097 | Canola | plasma membrane | 61.61 | 62.58 |
| KRH24254 | Soybean | cytosol | 60.99 | 62.15 |
| AT4G38690.1 | Thale cress | cytosol | 60.06 | 61.01 |
| KRH29259 | Soybean | plasma membrane | 47.68 | 60.87 |
| PGSC0003DMT400059705 | Potato | cytosol | 59.75 | 60.69 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 59.44 | 60.38 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 58.51 | 59.43 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 58.51 | 59.43 |
| Solyc01g111260.2.1 | Tomato | nucleus | 58.2 | 59.12 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 58.51 | 58.51 |
| Solyc10g055240.1.1 | Tomato | cytosol | 56.97 | 57.86 |
| AT4G34920.1 | Thale cress | cytosol | 56.35 | 57.23 |
| CDY17493 | Canola | peroxisome | 55.73 | 56.6 |
| CDY58810 | Canola | peroxisome | 55.73 | 56.43 |
| Bra034663.1-P | Field mustard | cytosol | 55.42 | 56.29 |
| PGSC0003DMT400059701 | Potato | cytosol | 33.13 | 51.2 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 54.49 | 45.36 |
| CDY58809 | Canola | peroxisome | 54.18 | 45.1 |
| AT4G34930.1 | Thale cress | plastid | 54.18 | 44.76 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 54.8 | 41.07 |
| Bra034664.1-P | Field mustard | cytosol | 47.06 | 40.86 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 54.49 | 39.55 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G328000.1 | EnsemblPlantsGene:TraesCS5B01G328000 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | PFAM:PF00388 | PFscan:PS50007 |
| SEG:seg | SMART:SM00148 | SUPFAM:SSF51695 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5B:+:511602150..511603121
Molecular Weight (calculated)
35916.8 Da
IEP (calculated)
8.726
GRAVY (calculated)
-0.259
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIGAFFSG QVNRVKDVAS QQQALARRQS ASGQDFPGSG HRPADRKTWM AELGPERLRV HQVVWPGTHN SATAEIGVPF VTRPFAQCQS LSVYDQLATG
101: CRLLDVRVQK DRRVCHGPLV ASYTVDVVID DVRRFLAETV AEVVVLEVRT EFGHEDPPEF AKYLVERLGE HLIPQDDAVF RKTIAELLPR RVICVWKPRN
201: SPAPARGGPL WSGGYLRDNW INTDLPEKKF DGNLASLAQQ PDPAAARRYL YRVENTLTPQ TDNPVLLVEP VTRRIHRFAR FFIAQAFARG LGGKLQVFST
301: DFIDGDFVDA CAGVTKARVD GTA
101: CRLLDVRVQK DRRVCHGPLV ASYTVDVVID DVRRFLAETV AEVVVLEVRT EFGHEDPPEF AKYLVERLGE HLIPQDDAVF RKTIAELLPR RVICVWKPRN
201: SPAPARGGPL WSGGYLRDNW INTDLPEKKF DGNLASLAQQ PDPAAARRYL YRVENTLTPQ TDNPVLLVEP VTRRIHRFAR FFIAQAFARG LGGKLQVFST
301: DFIDGDFVDA CAGVTKARVD GTA
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.