Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- golgi 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059705 | Potato | cytosol | 75.12 | 49.37 |
| Solyc10g055240.1.1 | Tomato | cytosol | 71.77 | 47.17 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 62.68 | 41.2 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 61.72 | 39.94 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 60.29 | 39.62 |
| KRH24254 | Soybean | cytosol | 58.37 | 38.49 |
| KRH51412 | Soybean | cytosol | 57.89 | 38.17 |
| AT4G38690.1 | Thale cress | cytosol | 57.89 | 38.05 |
| CDY12097 | Canola | plasma membrane | 56.94 | 37.42 |
| CDX90289 | Canola | cytosol | 56.94 | 37.42 |
| Bra010731.1-P | Field mustard | cytosol | 56.94 | 37.42 |
| AT4G34920.1 | Thale cress | cytosol | 55.5 | 36.48 |
| KRH29259 | Soybean | plasma membrane | 44.02 | 36.36 |
| CDY17493 | Canola | peroxisome | 54.07 | 35.53 |
| CDY58810 | Canola | peroxisome | 54.07 | 35.42 |
| Bra034663.1-P | Field mustard | cytosol | 52.63 | 34.59 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 51.2 | 33.13 |
| TraesCS5B01G328000.1 | Wheat | plastid | 51.2 | 33.13 |
| TraesCS5D01G333900.1 | Wheat | plastid | 50.24 | 32.51 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 48.8 | 31.97 |
| HORVU5Hr1G083100.1 | Barley | plastid | 49.28 | 31.89 |
| EER99259 | Sorghum | cytosol | 50.72 | 31.27 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 49.76 | 30.95 |
| HORVU5Hr1G045890.1 | Barley | plastid | 48.8 | 30.72 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 49.28 | 30.47 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 49.28 | 30.47 |
| AT4G34930.1 | Thale cress | plastid | 56.94 | 30.43 |
| Bra034664.1-P | Field mustard | cytosol | 50.24 | 28.23 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 52.15 | 28.09 |
| CDY58809 | Canola | peroxisome | 51.67 | 27.84 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 52.63 | 25.52 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 52.15 | 24.49 |
| HORVU5Hr1G082990.1 | Barley | plastid | 21.05 | 11.55 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059701 | EnsemblPlantsGene:PGSC0003DMG400023210 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008081 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR017946 | InterPro:PLC-like_Pdiesterase_TIM-brl | PANTHER:PTHR13593 |
| PANTHER:PTHR13593:SF35 | PGSC:PGSC0003DMG400023210 | SUPFAM:SSF51695 | UniParc:UPI000294EDA2 | UniProt:M1C4M1 | MapMan:35.2 |
Description
Phospholipase C [Source:PGSC_GENE;Acc:PGSC0003DMG400023210]
Coordinates
chr10:+:46715044..46715807
Molecular Weight (calculated)
24469.0 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.581
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNELSRQGE NLRDLQNRNG CNFPGYDYRV QDRKNWMSTL APERLHANQI VWPEIIILEI SREFGQQDPS DFDRYLEAEL GEFLIHQDDN VFNKTIAELL
101: PKRIICIWKP RNSPEPRQGG PLWSSCYLKG DWTNTDLPET KFENNMQHLS NQPPVTSRIF FYKVENTVTA QANAINLLFS TLWVEQLNLR IQPFARLFIM
201: ECISRGYGD
101: PKRIICIWKP RNSPEPRQGG PLWSSCYLKG DWTNTDLPET KFENNMQHLS NQPPVTSRIF FYKVENTVTA QANAINLLFS TLWVEQLNLR IQPFARLFIM
201: ECISRGYGD
001: MSFFGKLADT VVSFANDSAK SVVEEVVNPT VSFANNSART VVEEVVNPTV SFANDSARTV VEKVLNPTVS FIDSQLQRPR DVLVQQQILD NLQESNGSNF
101: PGDDYHSPDR KNWMAHLSVD KLTLNKIVWP GTHDSATNGI GDPLVTRWLG ECQTLSIFDQ LVLGTRVLDI RFQEDRCVCH GALSSYNVDV VLNDVIRFVS
201: ETQSEIIILE IRTEFGKKDP FEFETYLVDK LGQFLIHQDD NLFNKPVSEI LPKRVICIWK PRESPKPSRG GILWNSDYLK DNWIDTDLPW TKFQSNLKHL
301: SEQQPISSRK FFYRVENTVT PQADNPVVWV KQVTDRIRKH ARLFISQCAS KGYGDKLQIL STDFIEGDFV DACVGLTHAR MKGQFDKISP S
101: PGDDYHSPDR KNWMAHLSVD KLTLNKIVWP GTHDSATNGI GDPLVTRWLG ECQTLSIFDQ LVLGTRVLDI RFQEDRCVCH GALSSYNVDV VLNDVIRFVS
201: ETQSEIIILE IRTEFGKKDP FEFETYLVDK LGQFLIHQDD NLFNKPVSEI LPKRVICIWK PRESPKPSRG GILWNSDYLK DNWIDTDLPW TKFQSNLKHL
301: SEQQPISSRK FFYRVENTVT PQADNPVVWV KQVTDRIRKH ARLFISQCAS KGYGDKLQIL STDFIEGDFV DACVGLTHAR MKGQFDKISP S
Arabidopsis Description
At4g34930 [Source:UniProtKB/TrEMBL;Acc:Q9SW42]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.