Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G327500.1 | Wheat | cytosol | 97.32 | 96.75 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 96.13 | 95.56 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 77.98 | 82.13 |
| EER99259 | Sorghum | cytosol | 80.06 | 79.35 |
| TraesCS5D01G333900.1 | Wheat | plastid | 72.32 | 75.23 |
| Bra010731.1-P | Field mustard | cytosol | 65.18 | 68.87 |
| CDX90289 | Canola | cytosol | 65.18 | 68.87 |
| KRH51412 | Soybean | cytosol | 64.58 | 68.45 |
| CDY12097 | Canola | plasma membrane | 64.58 | 68.24 |
| AT4G38690.1 | Thale cress | cytosol | 63.1 | 66.67 |
| KRH24254 | Soybean | cytosol | 61.31 | 64.98 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 61.31 | 64.78 |
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 61.01 | 64.47 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 61.01 | 64.47 |
| PGSC0003DMT400059705 | Potato | cytosol | 60.12 | 63.52 |
| Solyc01g111260.2.1 | Tomato | nucleus | 60.12 | 63.52 |
| PGSC0003DMT400004107 | Potato | cytosol, mitochondrion, plastid | 60.71 | 63.16 |
| KRH29259 | Soybean | plasma membrane | 47.32 | 62.85 |
| Solyc10g055240.1.1 | Tomato | cytosol | 58.33 | 61.64 |
| AT4G34920.1 | Thale cress | cytosol | 56.85 | 60.06 |
| CDY58810 | Canola | peroxisome | 55.65 | 58.62 |
| CDY17493 | Canola | peroxisome | 55.06 | 58.18 |
| Bra034663.1-P | Field mustard | cytosol | 54.76 | 57.86 |
| PGSC0003DMT400059701 | Potato | cytosol | 30.95 | 49.76 |
| AT4G34930.1 | Thale cress | plastid | 55.06 | 47.31 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 54.17 | 46.91 |
| CDY58809 | Canola | peroxisome | 53.87 | 46.65 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 54.17 | 42.23 |
| Bra034664.1-P | Field mustard | cytosol | 46.13 | 41.67 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 54.17 | 40.9 |
| HORVU5Hr1G082990.1 | Barley | plastid | 44.05 | 38.85 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G333500.1 | EnsemblPlantsGene:TraesCS5D01G333500 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | PFAM:PF00388 | PFscan:PS50007 |
| SEG:seg | SUPFAM:SSF51695 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:423511918..423512928
Molecular Weight (calculated)
37727.9 Da
IEP (calculated)
7.694
GRAVY (calculated)
-0.387
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPNSDDN GKKNPLDAMG AFFSAQVNRR KLVTTQKLAM SERCTSCGDE FPGCAHRPAD RKTWMAELGP DRLRVHQVVW PGTHDSATNK IGIPFITRPF
101: AQCQSLSVYH QLALGCRLLD VRVQEERRVC HGVLATYSVD VVLDDVLRFL AETQSEVLVL EIRTEFGRED PPDFAKYLVE RLGEHLIPQD EAVFGKTVAE
201: LLPRRVICVW KPRKSPAPGR GEPLWSSGYL RDNWIDTDLP ETKYESNLKF LGQQPPARDR RYLYRVENTV TPQADNPVVC VRPVTNRIRG YARSFIAEAF
301: AKGLGDRLQV FSTDFIDGDF VDACAGVTKA RVDGTA
101: AQCQSLSVYH QLALGCRLLD VRVQEERRVC HGVLATYSVD VVLDDVLRFL AETQSEVLVL EIRTEFGRED PPDFAKYLVE RLGEHLIPQD EAVFGKTVAE
201: LLPRRVICVW KPRKSPAPGR GEPLWSSGYL RDNWIDTDLP ETKYESNLKF LGQQPPARDR RYLYRVENTV TPQADNPVVC VRPVTNRIRG YARSFIAEAF
301: AKGLGDRLQV FSTDFIDGDF VDACAGVTKA RVDGTA
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.