Factsheet for TraesCS5A01G327600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT4G34920.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G327500.1	Wheat	cytosol	96.45	96.45
TraesCS5D01G333500.1	Wheat	cytosol	95.56	96.13
Zm00001d006231_P001	Maize	cytosol, mitochondrion	77.51	82.13
EER99259	Sorghum	cytosol	78.99	78.76
TraesCS5A01G328000.1	Wheat	cytosol	73.67	77.09
KRH51412	Soybean	cytosol	64.5	68.77
Bra010731.1-P	Field mustard	cytosol	64.5	68.55
CDX90289	Canola	cytosol	64.5	68.55
CDY12097	Canola	plasma membrane	63.91	67.92
AT4G38690.1	Thale cress	cytosol	63.02	66.98
KRH24254	Soybean	cytosol	61.54	65.62
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	60.95	64.78
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	60.65	64.47
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	60.35	64.15
Solyc01g111260.2.1	Tomato	nucleus	60.06	63.84
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	60.95	63.78
KRH29259	Soybean	plasma membrane	47.34	63.24
PGSC0003DMT400059705	Potato	cytosol	59.47	63.21
Solyc10g055240.1.1	Tomato	cytosol	57.69	61.32
AT4G34920.1	Thale cress	cytosol	56.8	60.38
CDY58810	Canola	peroxisome	55.62	58.93
CDY17493	Canola	peroxisome	55.03	58.49
Bra034663.1-P	Field mustard	cytosol	54.73	58.18
PGSC0003DMT400059701	Potato	cytosol	30.47	49.28
AT4G34930.1	Thale cress	plastid	54.73	47.31
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	54.14	47.16
CDY58809	Canola	peroxisome	53.85	46.91
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	54.14	42.46
Bra034664.1-P	Field mustard	cytosol	46.15	41.94
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	54.14	41.12
HORVU5Hr1G082990.1	Barley	plastid	44.08	39.11

Protein Annotations

EnsemblPlants:TraesCS5A01G327600.1	EnsemblPlantsGene:TraesCS5A01G327600	Gene3D:3.20.20.190	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946
InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	PFAM:PF00388	PFscan:PS50007
SEG:seg	SMART:SM00148	SUPFAM:SSF51695	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5A:-:537117241..537118257

Molecular Weight (calculated)

37871.1 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.353

Length

338 amino acids

Sequence
(BLAST)

001: MSSSSPPNSD DSGKKHPLDA MGAFFSAQVN RRKLVTTQKL AMSERCTSCG DDFPGCAHRP ADRKAWMAEL GPDRLRLHQV VWPGTHDSAT NKIGIPFITR
101: PFAQCQSLSV YHQLALGCRL LDVRVQEERR VCHGVLATYS VDVVLDDVLR FLSETVSEVL VLEIRTEFGR EDPPDFAKYL VERLGEHLIP QDEAVFHKTV
201: AELLPRRVIC VWKPRKSPAP GRGEPLWSAG YLRDNWIDTD LPETKYESNL KFLGQQPPAK DRRYLYRVEN TVTPQADNPV VCVRPVTNRI RGYARSFIAE
301: AFAKGLGDRL QVFSTDFIDG DFVDACAGVT KARVDGAA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.