Factsheet for VIT_03s0038g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
peroxisome 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G38690.1	Thale cress	cytosol	78.93	78.93
Bra010731.1-P	Field mustard	cytosol	78.62	78.62
CDX90289	Canola	cytosol	78.62	78.62
KRH24254	Soybean	cytosol	78.3	78.55
CDY12097	Canola	plasma membrane	78.3	78.3
PGSC0003DMT400004106	Potato	cytosol, nucleus, peroxisome	77.67	77.67
KRH51412	Soybean	cytosol	77.36	77.6
Solyc01g111260.2.1	Tomato	nucleus	76.73	76.73
PGSC0003DMT400059705	Potato	cytosol	76.1	76.1
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	76.1	76.1
PGSC0003DMT400004107	Potato	cytosol, mitochondrion, plastid	77.04	75.85
Solyc10g055240.1.1	Tomato	cytosol	75.47	75.47
KRH29259	Soybean	plasma membrane	57.86	72.73
AT4G34920.1	Thale cress	cytosol	70.75	70.75
CDY58810	Canola	peroxisome	69.5	69.28
CDY17493	Canola	peroxisome	69.18	69.18
Bra034663.1-P	Field mustard	cytosol	68.55	68.55
EER99259	Sorghum	cytosol	66.67	62.54
Zm00001d006231_P001	Maize	cytosol, mitochondrion	62.26	62.07
TraesCS5D01G333500.1	Wheat	cytosol	64.78	61.31
TraesCS5B01G327500.1	Wheat	cytosol	65.09	61.24
TraesCS5A01G327600.1	Wheat	cytosol	64.15	60.35
PGSC0003DMT400059701	Potato	cytosol	39.62	60.29
TraesCS5A01G328000.1	Wheat	cytosol	60.69	59.75
TraesCS5B01G328000.1	Wheat	plastid	60.38	59.44
TraesCS5D01G333900.1	Wheat	plastid	59.43	58.51
HORVU5Hr1G083100.1	Barley	plastid	59.12	58.2
HORVU5Hr1G045890.1	Barley	plastid	55.03	52.71
AT4G34930.1	Thale cress	plastid	64.78	52.69
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	64.15	52.58
CDY58809	Canola	peroxisome	63.84	52.32
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	64.47	47.56
Bra034664.1-P	Field mustard	cytosol	53.77	45.97
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	64.15	45.84
HORVU5Hr1G082990.1	Barley	plastid	30.82	25.72

Protein Annotations

EntrezGene:100258966	wikigene:100258966	Gene3D:3.20.20.190	MapMan:35.2	ProteinID:CCB60631	ProteinID:CCB60631.1
UniProt:F6I115	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946	EntrezGene:LOC100258966
wikigene:LOC100258966	PFAM:PF00388	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PFscan:PS50007	PANTHER:PTHR13593
PANTHER:PTHR13593:SF35	SMART:SM00148	SUPFAM:SSF51695	TIGR:TC51896	UniParc:UPI00015C9094	ArrayExpress:VIT_03s0038g02090
EnsemblPlantsGene:VIT_03s0038g02090	EnsemblPlants:VIT_03s0038g02090.t01	unigene:Vvi.5175	RefSeq:XP_002277145	RefSeq:XP_002277145.1	:

Description

No Description!

Coordinates

chr3:+:1441262..1442535

Molecular Weight (calculated)

36070.3 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.400

Length

318 amino acids

Sequence
(BLAST)

001: MGSQASKQLA RRKALSTQKK TLCELNQTCG DVFPGSDYHP PDRKNWMSGL GPEKVHINKI VWPGTHDSAT NKIGIPLVSR PFAQCQSLSI YHQLVRGTRV
101: LDIRVQEDRR VCHGILVTYS IDSVIKDIKK FLAETQSEII ILEIRTEFGH QDPPEFEKYL EDQLGEFLIH QDDRVFGKTI AELLPKRIIC VWKPRKSPQP
201: KAGGPLWNAG HLKDNWIDTD LPSTKFDSNI KHLSEQAPVT SRKFFYRVEN TVTPQADNPV LCVKPVTRRI HGYARLFIAK CVSQGCADRL QIFSTDFIDE
301: DFVDACVGLT YARIEGKA

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.