Factsheet for Solyc10g055240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34920.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G34920.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059705	Potato	cytosol	93.4	93.4
Solyc01g111250.2.1	Tomato	cytosol, nucleus, peroxisome	79.56	79.56
Solyc01g111260.2.1	Tomato	nucleus	78.3	78.3
VIT_03s0038g02090.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	75.47	75.47
KRH24254	Soybean	cytosol	72.01	72.24
KRH51412	Soybean	cytosol	72.01	72.24
AT4G38690.1	Thale cress	cytosol	72.01	72.01
PGSC0003DMT400059701	Potato	cytosol	47.17	71.77
Bra010731.1-P	Field mustard	cytosol	71.7	71.7
CDX90289	Canola	cytosol	71.7	71.7
CDY12097	Canola	plasma membrane	71.07	71.07
AT4G34920.1	Thale cress	cytosol	68.55	68.55
KRH29259	Soybean	plasma membrane	53.46	67.19
CDY58810	Canola	peroxisome	66.98	66.77
CDY17493	Canola	peroxisome	66.67	66.67
Bra034663.1-P	Field mustard	cytosol	66.67	66.67
Zm00001d006231_P001	Maize	cytosol, mitochondrion	60.06	59.87
EER99259	Sorghum	cytosol	62.89	59.0
TraesCS5D01G333500.1	Wheat	cytosol	61.64	58.33
TraesCS5A01G327600.1	Wheat	cytosol	61.32	57.69
TraesCS5B01G327500.1	Wheat	cytosol	61.32	57.69
TraesCS5A01G328000.1	Wheat	cytosol	58.49	57.59
HORVU5Hr1G083100.1	Barley	plastid	57.86	56.97
TraesCS5B01G328000.1	Wheat	plastid	57.86	56.97
TraesCS5D01G333900.1	Wheat	plastid	57.23	56.35
AT4G34930.1	Thale cress	plastid	64.15	52.17
HORVU5Hr1G045890.1	Barley	plastid	54.4	52.11
CDX76304	Canola	cytoskeleton, cytosol, peroxisome	63.21	51.8
CDY58809	Canola	peroxisome	62.89	51.55
CDY71207	Canola	cytoskeleton, cytosol, peroxisome	62.89	46.4
Bra034664.1-P	Field mustard	cytosol	54.09	46.24
CDY17494	Canola	cytoskeleton, cytosol, peroxisome	63.21	45.17
HORVU5Hr1G082990.1	Barley	plastid	27.99	23.36

Protein Annotations

EnsemblPlants:Solyc10g055240.1.1	EnsemblPlantsGene:Solyc10g055240.1	Gene3D:3.20.20.190	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR000909	InterPro:IPR017946
InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PANTHER:PTHR13593	PANTHER:PTHR13593:SF35	PFAM:PF00388	PFscan:PS50007
SMART:SM00148	SUPFAM:SSF51695	UniParc:UPI000276948E	UniProt:K4D1B6	MapMan:35.2	:

Description

No Description!

Coordinates

chr10:+:56507085..56508120

Molecular Weight (calculated)

36855.1 Da

IEP (calculated)

6.185

GRAVY (calculated)

-0.439

Length

318 amino acids

Sequence
(BLAST)

001: MGAEVSKQIE RRKAIDTQKK NLCDLKEKNG CNFPGYDYNV QDRKNWMSTL GPEKLHVNQI VWPGTHDSAT DEIGIPFISR PFGQCQSLSI YEQLVLGVRV
101: LDIRVQEDRH VCHGILLCYH IDVVINDVKK FLSETHSEII ILEIRTEFGH DDPPNFDKYL EAQLGEFLIH QHDNVFNNTV AELLPKRIIC VWKPGKSPKP
201: RQGSPLWNSC YLKDDWIDTD LPEKKFESNM KYLSEQPPIT SRKFFYRVEN TVTPQADNPV LWVKPVTERI HPYARLFIME CISRGYADRL QIFSSDFIEE
301: DFVDACIGLT NARIEGKL

Best Arabidopsis Sequence Match ( AT4G38690.1 )
(BLAST)

001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA

Arabidopsis Description

AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.