Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- plasma membrane 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34920.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
| AT4G34920.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004106 | Potato | cytosol, nucleus, peroxisome | 95.6 | 95.6 |
| Solyc01g111250.2.1 | Tomato | cytosol, nucleus, peroxisome | 88.68 | 88.68 |
| Solyc10g055240.1.1 | Tomato | cytosol | 78.3 | 78.3 |
| VIT_03s0038g02090.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome | 76.73 | 76.73 |
| AT4G38690.1 | Thale cress | cytosol | 75.79 | 75.79 |
| Bra010731.1-P | Field mustard | cytosol | 75.16 | 75.16 |
| CDX90289 | Canola | cytosol | 75.16 | 75.16 |
| CDY12097 | Canola | plasma membrane | 74.84 | 74.84 |
| KRH51412 | Soybean | cytosol | 74.21 | 74.45 |
| KRH24254 | Soybean | cytosol | 73.58 | 73.82 |
| AT4G34920.1 | Thale cress | cytosol | 69.5 | 69.5 |
| KRH29259 | Soybean | plasma membrane | 55.03 | 69.17 |
| CDY17493 | Canola | peroxisome | 67.92 | 67.92 |
| Bra034663.1-P | Field mustard | cytosol | 67.61 | 67.61 |
| CDY58810 | Canola | peroxisome | 67.61 | 67.4 |
| EER99259 | Sorghum | cytosol | 65.09 | 61.06 |
| Zm00001d006231_P001 | Maize | cytosol, mitochondrion | 61.01 | 60.81 |
| TraesCS5D01G333500.1 | Wheat | cytosol | 63.52 | 60.12 |
| TraesCS5A01G327600.1 | Wheat | cytosol | 63.84 | 60.06 |
| TraesCS5B01G327500.1 | Wheat | cytosol | 63.21 | 59.47 |
| HORVU5Hr1G083100.1 | Barley | plastid | 59.75 | 58.82 |
| TraesCS5D01G333900.1 | Wheat | plastid | 59.43 | 58.51 |
| TraesCS5A01G328000.1 | Wheat | cytosol | 59.12 | 58.2 |
| TraesCS5B01G328000.1 | Wheat | plastid | 59.12 | 58.2 |
| HORVU5Hr1G045890.1 | Barley | plastid | 55.97 | 53.61 |
| AT4G34930.1 | Thale cress | plastid | 65.41 | 53.2 |
| CDX76304 | Canola | cytoskeleton, cytosol, peroxisome | 62.26 | 51.03 |
| CDY58809 | Canola | peroxisome | 61.95 | 50.77 |
| CDY71207 | Canola | cytoskeleton, cytosol, peroxisome | 62.26 | 45.94 |
| Bra034664.1-P | Field mustard | cytosol | 53.14 | 45.43 |
| CDY17494 | Canola | cytoskeleton, cytosol, peroxisome | 62.26 | 44.49 |
| HORVU5Hr1G082990.1 | Barley | plastid | 27.36 | 22.83 |
Protein Annotations
| EnsemblPlants:Solyc01g111260.2.1 | EnsemblPlantsGene:Solyc01g111260.2 | Gene3D:3.20.20.190 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008081 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR000909 | InterPro:IPR017946 |
| InterPro:PLC-like_Pdiesterase_TIM-brl | InterPro:PLipase_C_PInositol-sp_X_dom | PANTHER:PTHR13593 | PANTHER:PTHR13593:SF35 | PFAM:PF00388 | PFscan:PS50007 |
| SMART:SM00148 | SUPFAM:SSF51695 | UniParc:UPI0002767549 | UniProt:K4B3Y8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1:+:97568149..97569705
Molecular Weight (calculated)
36625.9 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.485
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFLSKQME RRRAISTQKK LLCDLKEKDN TDFPGCDHCP EDRKNWMSTL ALNKLHVNKI VWPGTHDSAT NKIGIPFISR PFARTQSLSI YDQLVMGTRV
101: LDIRVQKDGR VCHGILVSYN VDVVINDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL ENQLGEFLIH QDDSVFNKTV AELLPKRVIC VWKPRKSAQP
201: KHGSSLWSAG YLKDNWMDTD LPETKFESNM KHLSEQQPVT SRKHFYRVEN TVTPQADNPV LCVKPVTNRI RPHARLFIKE CICRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGKI
101: LDIRVQKDGR VCHGILVSYN VDVVINDVKK FLSETQSEII ILEIRTEFGH DDPPEFDKYL ENQLGEFLIH QDDSVFNKTV AELLPKRVIC VWKPRKSAQP
201: KHGSSLWSAG YLKDNWMDTD LPETKFESNM KHLSEQQPVT SRKHFYRVEN TVTPQADNPV LCVKPVTNRI RPHARLFIKE CICRGYGDRL QIYSTDFIDE
301: DFVDACIGLT NARIEGKI
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
Arabidopsis Description
AT4g38690/F20M13_250 [Source:UniProtKB/TrEMBL;Acc:Q9SZP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.